View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21300_low_6 (Length: 254)
Name: NF21300_low_6
Description: NF21300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21300_low_6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 14739376 - 14739615
Alignment:
| Q |
15 |
tatgcataaacaggatccttgttgtctaactatacaaagtttttctttagataagcatgagacaaaagggatttacttaaactcaatagcaaattttccg |
114 |
Q |
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| T |
14739376 |
tatgcataaacaggatccttgttgtctaactatataaagtttttttttagataagcatgagacaaaagggatttacttaaactcaatagcaaattttccg |
14739475 |
T |
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| Q |
115 |
tgacttaaagattgcaattgattcttgacagcagtctcttcctccaaacaatctgataaaaatccagaaaaggatatcttcatttcctccgagattgtaa |
214 |
Q |
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| T |
14739476 |
tgacttaaagattgcaattgattcttgacagcagtctcttcctccaaacaatctgataaaaatccagaaaaggatatcttcatttcctcctagattgtaa |
14739575 |
T |
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| Q |
215 |
acttttccaccaaaagacttatcatttggacttcatattt |
254 |
Q |
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| T |
14739576 |
acttttctaccaaaagacttatcatttggacttcatattt |
14739615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 17586836 - 17586597
Alignment:
| Q |
15 |
tatgcataaacaggatccttgttgtctaactatacaaagtttttctttagataagcatgagacaaaagggatttacttaaactcaatagcaaattttccg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17586836 |
tatgcataaacaggatccttgttgtctaactatataaagtttttttttagataagcacgagacaaaagggatttacttaaactcaatagcaaattttccg |
17586737 |
T |
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| Q |
115 |
tgacttaaagattgcaattgattcttgacagcagtctcttcctccaaacaatctgataaaaatccagaaaaggatatcttcatttcctccgagattgtaa |
214 |
Q |
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| T |
17586736 |
tgacagagagattgcaattgattcttgacagcagtctcttcctccaaacaatctgataaaaatccagaaaaggatatcttcatttcctccaagattgtaa |
17586637 |
T |
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| Q |
215 |
acttttccaccaaaagacttatcatttggacttcatattt |
254 |
Q |
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| T |
17586636 |
acttttctaccaaaagacttatcatttggacttcatattt |
17586597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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