View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21301_high_5 (Length: 309)
Name: NF21301_high_5
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21301_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11230469 - 11230213
Alignment:
| Q |
1 |
gtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggattcctatatccaacggtggttg |
100 |
Q |
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| T |
11230469 |
gtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggattcctatatccaacgatggttg |
11230370 |
T |
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| Q |
101 |
cttaggagtgattccccgtctctgctacgacatgtatcgattggttgggatcatacactgatgtctcttcctaaaatgcttatgaacagcacttgtcttc |
200 |
Q |
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| T |
11230369 |
cttaggagtgattccccgtctctgctacgacatgtatcgattggttgggatcatacactgatgtctcttcctaaaatgcttatgaacagcacttgtcttc |
11230270 |
T |
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| Q |
201 |
aacgcttggaactctggaatattccatctctcactacattcccgatagatggtctat |
257 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11230269 |
aacgtttggaactctggaatattccatctctcactacattcccgatagatggtctat |
11230213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 10502832 - 10502879
Alignment:
| Q |
188 |
agcacttgtcttcaacgcttggaactctggaatattccatctctcact |
235 |
Q |
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| T |
10502832 |
agcacttgtcttcaacacttggaactctatgatattccatctctcact |
10502879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 31677576 - 31677496
Alignment:
| Q |
153 |
atacactgatgtctcttcctaaaatgcttatgaacagcacttgtcttcaacgcttggaactctggaatattccatctctca |
233 |
Q |
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| T |
31677576 |
atacacttctgtctctacctaaaatgattataagcagcacttgtctccaacacttggaactttataatattccatatctca |
31677496 |
T |
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