View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21301_high_7 (Length: 252)
Name: NF21301_high_7
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21301_high_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 8142560 - 8142329
Alignment:
| Q |
21 |
tataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaagcagct |
117 |
Q |
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| T |
8142560 |
tataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaagttacagatttgtcatagcctccaaagcagct |
8142461 |
T |
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| Q |
118 |
aatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacacttcttagc |
217 |
Q |
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| T |
8142460 |
aatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacacttcttagc |
8142361 |
T |
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| Q |
218 |
caatcataataccttaactcacagtgactatgtat |
252 |
Q |
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| T |
8142360 |
caatc---ataccttaactcacagtgactatgtat |
8142329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 7498112 - 7498299
Alignment:
| Q |
15 |
tatccatataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaa |
111 |
Q |
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| T |
7498112 |
tatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaagttacagatttgtcatagcctccaaa |
7498211 |
T |
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| Q |
112 |
gcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaa |
199 |
Q |
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| T |
7498212 |
gcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaatgaatataaataaa |
7498299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 7500900 - 7501137
Alignment:
| Q |
15 |
tatccatataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaa |
111 |
Q |
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| T |
7500900 |
tatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagttacagatttgccatagcccccaaa |
7500999 |
T |
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| Q |
112 |
gcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacactt |
211 |
Q |
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| T |
7501000 |
acagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaataaatgaggcacatat |
7501099 |
T |
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| Q |
212 |
cttagccaatcataataccttaactcacagtgactatgtat |
252 |
Q |
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| T |
7501100 |
cttagccaagc---atgccttaactcacaatgactatgtat |
7501137 |
T |
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