View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21301_low_1 (Length: 757)
Name: NF21301_low_1
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21301_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 135 - 511
Target Start/End: Complemental strand, 16087805 - 16087433
Alignment:
| Q |
135 |
ttgtgttgattttaaaatttctaccgttcaaattgtgatcttggttttttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaatta |
234 |
Q |
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| T |
16087805 |
ttgtgttgattttaaa-tttctaccat-caaattgtgatcttggttttt--aactattattttgagcaaaatgtgtttgagacaagttaacgtgaaatta |
16087710 |
T |
|
| Q |
235 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087709 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
16087610 |
T |
|
| Q |
335 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087609 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
16087510 |
T |
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| Q |
435 |
catcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttatgtctttaatccttggtgcttatt |
511 |
Q |
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| T |
16087509 |
catcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttatgtctttaatccttggtgcttatt |
16087433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 579 - 738
Target Start/End: Complemental strand, 16087434 - 16087279
Alignment:
| Q |
579 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcattatgttggaacgtataatcatattataatgtaacgtgtaaagttctttgaac |
678 |
Q |
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| T |
16087434 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcactatgttggaacatataatcatattataatgtg----gtaaagttctttgaac |
16087339 |
T |
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| Q |
679 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
738 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087338 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
16087279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 91 - 397
Target Start/End: Complemental strand, 38643343 - 38643027
Alignment:
| Q |
91 |
tgttgttatgatcacgatagcttgttattaatgaagatggacttttgtgttgattttaaaa----tttctaccgttcaaattgtgatcttggttttttaa |
186 |
Q |
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|||| |||| || ||||||| ||| || |||||||||||||||||||| | ||||||||| |||||||| || |||||| ||||| | | |||| |
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| T |
38643343 |
tgttattattattacgatagtttggtagtaatgaagatggacttttgtatggattttaaatctgttttctaccattaaaattgcactcttgatctcttaa |
38643244 |
T |
|
| Q |
187 |
actattattttgagcaaaatgtgtttgagacaagttaacatgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatcttttga |
286 |
Q |
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||||||| |||||||||||| |||||| |||| ||| |||||| |||| || |||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
38643243 |
actattactttgagcaaaatacgtttgaaacaaattatagtgaaataaacagattgaaatattttattagatgtggaatacttactatgtcat-ttttga |
38643145 |
T |
|
| Q |
287 |
taaactttaatt-agtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattt------tgtgtg |
379 |
Q |
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|||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
38643144 |
taaagtttaatttagtgaaatattattttagtcttggttctcatgaatatgtgatatttatagtaggagaattcctttttaacatttttttttgtgtgtg |
38643045 |
T |
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| Q |
380 |
tgtataaatgagaactat |
397 |
Q |
| |
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|||||||||||||||||| |
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| T |
38643044 |
tgtataaatgagaactat |
38643027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 396
Target Start/End: Original strand, 19974422 - 19974514
Alignment:
| Q |
303 |
aaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaacta |
396 |
Q |
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|||||||| |||||| ||||| ||||||| ||| || |||||| ||||||||||||| |||||||| ||||| ||||||||| |||||| |||| |
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| T |
19974422 |
aaatattaatttaaatttggtgctcatgagtatgtggtatttacagtgggagaattcttttttaacgatttt-tgtgtgtatgaatgaggacta |
19974514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
393 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
437 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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