View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21301_low_2 (Length: 541)
Name: NF21301_low_2
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21301_low_2 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Complemental strand, 26721382 - 26720872
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721382 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
26721283 |
T |
|
| Q |
114 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
26721282 |
ctaaaatcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaataaaaattaaagacctaactaaatactttttgaacagca |
26721183 |
T |
|
| Q |
214 |
aaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaataaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26721182 |
aaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaat-aa |
26721084 |
T |
|
| Q |
314 |
aatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatcaacgacaatcggaaacattgg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721083 |
aatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagggaaagagccatcaacgacaatcggaaacattgg |
26720984 |
T |
|
| Q |
414 |
actcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26720983 |
actcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaatcaaaagaggcaacgggatgaagagacctagagaggtggtcgca |
26720884 |
T |
|
| Q |
514 |
agagaaaattca |
525 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26720883 |
agagaaaattca |
26720872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 303 - 501
Target Start/End: Complemental strand, 44162158 - 44161950
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca-----acga |
397 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||| |||| |||| |
|
|
| T |
44162158 |
aattaaataaaa-tagtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagggaaagagcgatcagcacgacga |
44162060 |
T |
|
| Q |
398 |
caatcggaaacattggactcatctgagtgttcctcgcactggcgcatgg------tgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaa |
491 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||| |||| ||||||||| | |
|
|
| T |
44162059 |
cgatcggcaacattggactcatcagagtgttcatcatactggcgcatggtgttgatgttggtgttgaatgaacgggaagcggaagaagcaacgggacata |
44161960 |
T |
|
| Q |
492 |
gagacctaga |
501 |
Q |
| |
|
|||||||||| |
|
|
| T |
44161959 |
gagacctaga |
44161950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 45117563 - 45117910
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117563 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
45117662 |
T |
|
| Q |
114 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
45117663 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
45117762 |
T |
|
| Q |
212 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45117763 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatggcgttggtgtatgaattaaat- |
45117861 |
T |
|
| Q |
312 |
aaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45117862 |
aaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
45117910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 377 - 525
Target Start/End: Original strand, 45117904 - 45118052
Alignment:
| Q |
377 |
gagggaaagagccatcaacgacaatcggaaacattggactcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaag |
476 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117904 |
gaggaaaagagccatcaacgacgatcggaaacattggacttgtctgagtgttcctcgtactggcgcatggtgttggtgttgaatgaacgggaagcgaaag |
45118003 |
T |
|
| Q |
477 |
aggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattca |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
45118004 |
aggcaacgggatgaagagacctagagaggaggctgcaggagaaaattca |
45118052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 435 - 525
Target Start/End: Complemental strand, 19769309 - 19769219
Alignment:
| Q |
435 |
actggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattca |
525 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || | ||||||||||| |
|
|
| T |
19769309 |
actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagagacctagagaggaggccggaggagaaaattca |
19769219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 19769384 - 19769317
Alignment:
| Q |
313 |
aaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagg |
380 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
19769384 |
aaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcgagtgcgagg |
19769317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 2986501 - 2986154
Alignment:
| Q |
14 |
cacagacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2986501 |
cacacacaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaa |
2986402 |
T |
|
| Q |
114 |
ctaaaa--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2986401 |
ctaaaaactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacag |
2986302 |
T |
|
| Q |
212 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtgtatgaattaaata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
2986301 |
caaaaacagggcactgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatgacgttggtgtatgaattaaat- |
2986203 |
T |
|
| Q |
312 |
aaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2986202 |
aaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
2986154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 377 - 525
Target Start/End: Complemental strand, 2986160 - 2986012
Alignment:
| Q |
377 |
gagggaaagagccatcaacgacaatcggaaacattggactcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaag |
476 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2986160 |
gaggaaaagagccatcaacgacgatcggaaacattggactcatctgagtgttcctcgtactggcgcatgatgttggtgttgaatgaacgggaagcgaaag |
2986061 |
T |
|
| Q |
477 |
aggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattca |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2986060 |
aggcaacgggatgaagagacctagagaggaggcagcaggagaaaattca |
2986012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 315 - 525
Target Start/End: Original strand, 10495854 - 10496069
Alignment:
| Q |
315 |
atagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca-----acgacaatcggaaaca |
409 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||| ||| | |||| |
|
|
| T |
10495854 |
atagtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagggaaagagcgatcagcgcgacgacgatcagcaaca |
10495953 |
T |
|
| Q |
410 |
ttggactcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggt |
509 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
10495954 |
ttggactcattagagtgttcatcgtactagcgcatggtgttagtgttgaatgaacgggaaacagaagaggcaacgggatagagagacctatagaggaggc |
10496053 |
T |
|
| Q |
510 |
cgcaagagaaaattca |
525 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
10496054 |
cgcgggagaaaattca |
10496069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 322 - 508
Target Start/End: Complemental strand, 246633 - 246442
Alignment:
| Q |
322 |
aattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca-----acgacaatcggaaacattggact |
416 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||| |||||| ||||||||| | |
|
|
| T |
246633 |
aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagggaaagagcgatcggcacgacgagaatcggcaacattggaat |
246534 |
T |
|
| Q |
417 |
catctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggagg |
508 |
Q |
| |
|
|||| ||| |||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||| | |||||||| ||||||||| |
|
|
| T |
246533 |
catcggagcgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacaggacggagagacctggagaggagg |
246442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 313 - 525
Target Start/End: Complemental strand, 98333 - 98117
Alignment:
| Q |
313 |
aaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca-----acgacaatcggaaa |
407 |
Q |
| |
|
|||||| |||| |||||||| ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| || | ||||| ||||| || |
|
|
| T |
98333 |
aaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgcaagagaaagagcgataagcgtgacgacgatcggcaa |
98235 |
T |
|
| Q |
408 |
cattggactcatctgagtgttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggag |
507 |
Q |
| |
|
||||||||| ||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
98234 |
cattggacttatcagagtgttcgtcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacagagagacctagagaggag |
98135 |
T |
|
| Q |
508 |
gtcgcaagagaaaattca |
525 |
Q |
| |
|
| | | ||||||||||| |
|
|
| T |
98134 |
gccagaggagaaaattca |
98117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 9227 - 9318
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatcaac |
395 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
9227 |
aattaaataaaa-tagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagggaaagagctatcaac |
9318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 16359329 - 16359240
Alignment:
| Q |
303 |
aattaaataaaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggctagtgtgagggaaagagccatca |
393 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
16359329 |
aattaaataaaac-agtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcaagggaaagagcgatca |
16359240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University