View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21301_low_3 (Length: 521)

Name: NF21301_low_3
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21301_low_3
NF21301_low_3
[»] chr2 (13 HSPs)
chr2 (18-513)||(32179464-32179959)
chr2 (415-493)||(32185302-32185379)
chr2 (30-86)||(32488840-32488896)
chr2 (98-159)||(32176872-32176933)
chr2 (236-301)||(32177010-32177075)
chr2 (30-80)||(32204132-32204180)
chr2 (416-493)||(32177145-32177222)
chr2 (30-80)||(32210091-32210141)
chr2 (36-78)||(32176763-32176805)
chr2 (36-86)||(32185045-32185095)
chr2 (238-294)||(32160792-32160848)
chr2 (91-188)||(32488957-32489054)
chr2 (259-303)||(32185192-32185236)


Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 32179464 - 32179959
Alignment:
Q  18 agtacatacaactcaaagtttgaatattgctcaacattttattttgacttttttgttacttgggggctacgtcgatattgtattttcaatgaccctagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32179464 agtacatacaactcaaagtttgaatattgctcaacattttattttgacttttttgttacttgggggctacgtcgatattgtattttcaatgaccctagtc 32179563  T
Q  118 tcatcgcaaaataatatctataaatctatatataaatcaatgcatacatgttgctgaacatagtatgacaacagcttcnnnnnnnnnattccaagtctat 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  32179564 tcatcgcaaaataatatctataaatctatatataaatcaatacatacatgttgctgaacatagtatgacaacagcttctttttttttattccaagtctat 32179663  T
Q  218 ttagacattttagacatgagatttaacttctgatctctttatcaaatttgtagagctttgtataaatttatcaaagagataaaaataacttcaaagttaa 317  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32179664 ttagacattttagacatgagatttaacttttgatctctttatcaaatttgtagagctttgtataaatttatcaaagagataaaaataacttcaaagttaa 32179763  T
Q  318 atatgccctaaaataagaggttgtgttagaaacatatgctatctaatcaaaaagtgcaattgattctaaccatggtaatagaaagtgnnnnnnnaccaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  32179764 atatgccctaaaataagaggttgtgttagaaacatatgctatctaatcaaaaagtgcaattgattctaaccatggtaatagaaagtttttttttaccaat 32179863  T
Q  418 aaaattatgagttttaaattgcaaagagaagaaagtgttgggagaaaatgttaccacaaccgaagatcaaattttgttgatgtattttttatttct 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32179864 aaaattatgagttttaaattgcaaagagaagaaagtgttgggagaaaatgttaccacaaccgaagatcaaattttgttgatgtattttttatttct 32179959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 32185302 - 32185379
Alignment:
Q  415 aataaaattatgagttttaaattgcaaagagaagaaagtgttgggagaaaatgttaccacaaccgaagatcaaattttg 493  Q
    |||||| |||||||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  32185302 aataaagttatgagttttaaattgcaa-gaaaaggaagggttaggagaaaatgttaccacaaccgaagatcaaattttg 32185379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 32488840 - 32488896
Alignment:
Q  30 tcaaagtttgaatattgctcaacattttattttgacttttttgttacttgggggcta 86  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  32488840 tcaaagtttgaatattgctcaacattttattttgactttttggttacttaggggcta 32488896  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 32176872 - 32176933
Alignment:
Q  98 tattttcaatgaccctagtctcatcgcaaaataatatctataaatctatatataaatcaatg 159  Q
    ||||||||||||| ||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  32176872 tattttcaatgacactagtctcatttcaaaataacatctataaatctatatgtaaatcaatg 32176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 32177010 - 32177075
Alignment:
Q  236 agatttaacttctgatctctttatcaaatttgtagagctttgtataaatttatcaaagagataaaa 301  Q
    ||||||||||| | |||||||||||||||||||||| |||| |||||  |||||||||||||||||    
T  32177010 agatttaacttttcatctctttatcaaatttgtagaactttatataagattatcaaagagataaaa 32177075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 32204180 - 32204132
Alignment:
Q  30 tcaaagtttgaatattgctcaacattttattttgacttttttgttacttgg 80  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  32204180 tcaaagtttgaatattgctcaacatttta--ttgacttttttgttacttgg 32204132  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 32177145 - 32177222
Alignment:
Q  416 ataaaattatgagttttaaattgcaaagagaagaaagtgttgggagaaaatgttaccacaacc-gaagatcaaattttg 493  Q
    ||||| ||| |||| || |||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  32177145 ataaagttacgagtctttaattgcaa-gagaaggaagtgttaggagaaaatgttaccacaaccggaagatcaaattttg 32177222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 32210141 - 32210091
Alignment:
Q  30 tcaaagtttgaatattgctcaacattttattttgacttttttgttacttgg 80  Q
    |||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  32210141 tcaaagtttgaatattgctcaacattttattttgacttctttataacttgg 32210091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 32176763 - 32176805
Alignment:
Q  36 tttgaatattgctcaacattttattttgacttttttgttactt 78  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  32176763 tttgaatattgctcaacattttattttgaatttttggttactt 32176805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 32185045 - 32185095
Alignment:
Q  36 tttgaatattgctcaacattttattttgacttttttgttacttgggggcta 86  Q
    |||||||||| |||||||||||||||||| ||||| ||||||| |||||||    
T  32185045 tttgaatatttctcaacattttattttgattttttggttacttaggggcta 32185095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 32160792 - 32160848
Alignment:
Q  238 atttaacttctgatctctttatcaaatttgtagagctttgtataaatttatcaaaga 294  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||||  ||||||||||    
T  32160792 atttaacttttgatctctttattgaatttgtagaactttgtataagattatcaaaga 32160848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 32488957 - 32489054
Alignment:
Q  91 gatattgtattttcaatgaccctagtctcatcgcaaaataatatctataaatctatatataaatcaatgcatacatgttgctgaacatagtatgacaa 188  Q
    |||||| ||||||||| ||| |||||||||||  |||| || ||| ||| ||| |||| ||||||||| |||| |   |||||||||| |||||||||    
T  32488957 gatattatattttcaacgacactagtctcatcttaaaagaacatcaatacatccatatgtaaatcaatacatatacactgctgaacatggtatgacaa 32489054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 32185192 - 32185236
Alignment:
Q  259 tcaaatttgtagagctttgtataaatttatcaaagagataaaaat 303  Q
    ||||||||||| | ||||||||||  |||||||||||||||||||    
T  32185192 tcaaatttgtataactttgtataagattatcaaagagataaaaat 32185236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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