View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21301_low_4 (Length: 329)

Name: NF21301_low_4
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21301_low_4
NF21301_low_4
[»] chr1 (4 HSPs)
chr1 (47-314)||(8141945-8142208)
chr1 (1-57)||(8142221-8142278)
chr1 (48-144)||(4931654-4931749)
chr1 (114-198)||(18375038-18375123)
[»] chr2 (1 HSPs)
chr2 (1-248)||(9130812-9131063)
[»] chr4 (4 HSPs)
chr4 (114-191)||(1492102-1492180)
chr4 (8-56)||(1530418-1530466)
chr4 (7-57)||(1492294-1492344)
chr4 (128-191)||(1514798-1514862)
[»] chr5 (1 HSPs)
chr5 (1-57)||(22209803-22209859)
[»] chr3 (3 HSPs)
chr3 (213-259)||(47953982-47954028)
chr3 (74-106)||(41514446-41514478)
chr3 (1-57)||(54256590-54256646)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 47 - 314
Target Start/End: Complemental strand, 8142208 - 8141945
Alignment:
Q  47 caaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaatg 146  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8142208 caaagagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgcgaacacacaaatagaagttacataaacagaaatttaaaatg 8142109  T
Q  147 acttcatataaaacaaaaaatctcaatagttaaacaactagtaaagcatgatatatgcataaattattgcagaaagccattaacagaaattaaaagtgac 246  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8142108 acttcatataaaacaaaaaatctccatagttaaacaactagtaaagcatg----atgcataaattattgcagaaagccattaacagaaattaaaagtgac 8142013  T
Q  247 ttaaaactcaaaaaatctaaataattggtagttttaagttctaatcggtgataaaagatctaattatt 314  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8142012 ttaaaactcaaaaaatctaaataattggtagttttaagttttaatcggtgataaaagatctaattatt 8141945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8142278 - 8142221
Alignment:
Q  1 aatatcggatcgtggaaaatattggattgcca-aaaatccaatatgacaaatagcgga 57  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8142278 aatatcggatcgtggaaaatattggattgccaaaaaatccaatatgacaaatagcgga 8142221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 4931654 - 4931749
Alignment:
Q  48 aaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaa 144  Q
    |||||| |||| ||||| | ||||| |||||||||||||| |||||||||||||||| |  |||||||||| ||  ||||||| |||||||||||||    
T  4931654 aaatagtggaagctgcacacctgttgaaataaataattatatataaaataaagcatg-ttgcacacaaataaaaactacataaccagaaatttaaaa 4931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 18375123 - 18375038
Alignment:
Q  114 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatgat 198  Q
    ||||| ||| |||||||||||||||| |||||||||| | |||||||  ||||||||||||||| |||||| |  |||||||||||    
T  18375123 aaataaaagctacataaacagaaattaaaaatgacttgacataaaactcaaaatctcaatagttcaaacaaatgataaagcatgat 18375038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9131063 - 9130812
Alignment:
Q  1 aatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaag 100  Q
    ||||||| |||| |||||||||  ||| ||||||||| | |||||| | |||||| || |  |||||| |||||||||||||||||| ||||||||||||    
T  9131063 aatatcgtatcgcggaaaatatcagatcgccaaaaattcgatatgatacatagcgtaagccacaaaacggttcaaataaataattatatataaaataaag 9130964  T
Q  101 catgctaacacacaaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatg--- 196  Q
    |||||| ||| ||||||| ||| ||   ||||||||||| ||||||| || ||||| |||  ||||||||||||||| |||||||||||| | | ||       
T  9130963 catgct-acaaacaaataaaagctaaccaaacagaaattaaaaatgaattgatatacaacttaaaatctcaatagttcaaacaactagtagaacctggtg 9130865  T
Q  197 -atatatgcataaattattgcagaaagccattaacagaaattaaaagtgactt 248  Q
     |||  |||| | |||||||||||||||||| | |||||||||||||||||||    
T  9130864 catagttgcacacattattgcagaaagccataagcagaaattaaaagtgactt 9130812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 1492180 - 1492102
Alignment:
Q  114 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 191  Q
    ||||| ||| ||| |||||||||||| |||||||||| |||||||||  ||||| ||||||||| ||||||||||||||    
T  1492180 aaataaaagctacctaaacagaaattaaaaatgacttgatataaaactcaaaatttcaatagttcaaacaactagtaaa 1492102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 1530466 - 1530418
Alignment:
Q  8 gatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgg 56  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  1530466 gatcgtggaaagtatcggatcgccaaaaatccaatataacaaatagcgg 1530418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 1492344 - 1492294
Alignment:
Q  7 ggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 57  Q
    |||||| ||||||||| |||| ||||||||||| |||| ||||||||||||    
T  1492344 ggatcgcggaaaatataggatcgccaaaaatccgatataacaaatagcgga 1492294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 1514862 - 1514798
Alignment:
Q  128 taaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 191  Q
    ||||||||||||||||||||||| |  | ||||  ||||| ||||||||| ||||||||||||||    
T  1514862 taaacagaaatttaaaatgacttgacgttaaactcaaaatttcaatagttcaaacaactagtaaa 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22209803 - 22209859
Alignment:
Q  1 aatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 57  Q
    |||||| ||||  |||||||||||||| ||||||||||| |||||||||||||||||    
T  22209803 aatatctgatcacggaaaatattggatcgccaaaaatccgatatgacaaatagcgga 22209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 47953982 - 47954028
Alignment:
Q  213 ttgcagaaagccattaacagaaattaaaagtgacttaaaactcaaaa 259  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  47953982 ttgcagaaagccagaaacataaattaaaaatgacttaaaactcaaaa 47954028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 41514446 - 41514478
Alignment:
Q  74 aaataaataattatgtataaaataaagcatgct 106  Q
    |||||||||||||| ||||||||||||||||||    
T  41514446 aaataaataattatatataaaataaagcatgct 41514478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 54256590 - 54256646
Alignment:
Q  1 aatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 57  Q
    |||| ||||||||||||||||| |||| ||||||||||   ||||| ||||||||||    
T  54256590 aatagcggatcgtggaaaatatcggatcgccaaaaatctgctatgagaaatagcgga 54256646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University