View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21301_low_9 (Length: 236)

Name: NF21301_low_9
Description: NF21301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21301_low_9
NF21301_low_9
[»] chr2 (24 HSPs)
chr2 (18-220)||(39136178-39136380)
chr2 (18-157)||(39458169-39458308)
chr2 (18-203)||(39474250-39474435)
chr2 (18-203)||(39422462-39422647)
chr2 (18-203)||(39416345-39416530)
chr2 (18-113)||(39129487-39129582)
chr2 (18-203)||(39488163-39488348)
chr2 (33-114)||(39601994-39602075)
chr2 (34-118)||(39151897-39151981)
chr2 (49-119)||(44623617-44623687)
chr2 (18-103)||(39123536-39123621)
chr2 (45-117)||(39214925-39214997)
chr2 (41-117)||(39450499-39450575)
chr2 (43-157)||(27154981-27155095)
chr2 (45-114)||(39382213-39382282)
chr2 (36-113)||(39495534-39495611)
chr2 (45-117)||(39199482-39199554)
chr2 (45-117)||(39399013-39399085)
chr2 (46-117)||(39220162-39220233)
chr2 (45-104)||(39391666-39391725)
chr2 (69-111)||(39479182-39479224)
chr2 (47-117)||(44614473-44614543)
chr2 (45-105)||(39161102-39161162)
chr2 (45-105)||(39208032-39208092)
[»] chr7 (1 HSPs)
chr7 (18-203)||(19806556-19806741)
[»] chr8 (1 HSPs)
chr8 (47-118)||(44951384-44951455)
[»] chr5 (1 HSPs)
chr5 (45-104)||(33559636-33559695)
[»] chr6 (1 HSPs)
chr6 (75-113)||(16112428-16112466)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 39136380 - 39136178
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136380 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatgtcgtcgtcgtcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136280 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatgtcgtcgtcgtcatc 39136181  T
Q  218 atc 220  Q
    |||    
T  39136180 atc 39136178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 39458308 - 39458169
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||   || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39458308 attcttccaacataaatagtttcctttttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaa 157  Q
    || || | ||| ||  ||||||||||||||||||||||||    
T  39458208 gtctcgtccttttgcaatcctcaaatgatttttctaccaa 39458169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 39474250 - 39474435
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||  ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||  || ||||| ||    
T  39474250 attcttccaacatgactaattttctttttcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctctccttttctattt 39474349  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 203  Q
    | ||| | |||  |  ||||||||||||||||||||| ||  |||||| ||  ||||||| ||||||||||||||| |||||||||    
T  39474350 gcgtcgtcctttggcaatcctcaaatgatttttctacaaatgcaagttctttcttgagtgaggaaaatgatttatccgttgacatg 39474435  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 39422462 - 39422647
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||| ||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  39422462 attcttccaacatcactaatttcctttttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T
Q  118 gtgtctt-gcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 203  Q
     | | ||  ||||  || |||||||||||||||||||| ||  |||||| || |||||||| ||||||||||  |||| ||||||||    
T  39422562 ctcttttcccttcacat-tcctcaaatgatttttctacaaatgcaagttgttttttgagtgaggaaaatgatagatcaattgacatg 39422647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 39416345 - 39416530
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  39416345 attcttccaacataactaatttccttttgcttattttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttcttttctactt 39416444  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 203  Q
    |  | |  ||||||   |||||||||||||||||||  ||  |||||| || |||||||  ||||| |||||||||||||||||||    
T  39416445 gcatgtcccttctgcgttcctcaaatgatttttctataaatgcaagttcttttttgagttcggaaattgatttatcagttgacatg 39416530  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 39129582 - 39129487
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttct 113  Q
    ||||||||| |||| ||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  39129582 attcttccagcatcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

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Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 39488163 - 39488348
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||||||||||   |||||||||||||||||||||||||| ||||   |||||||||||| |||||||||||| ||||||| ||||| |||||||||||    
T  39488163 attcttccaacacaactaatttcctttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 203  Q
    |  | || ||| ||   |||||||||||  ||||||||||  |||||| || ||| ||   |||||||||||| |||| |||||||    
T  39488263 gccttttccttttgcattcctcaaatgaggtttctaccaatgcaagttcttttttcagcaaggaaaatgatttctcagatgacatg 39488348  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 39602075 - 39601994
Alignment:
Q  33 ctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttcta 114  Q
    |||||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||||||||||||||  |||||||||    
T  39602075 ctaatttcctttttcttattttcaagctctttgcggcactcctgaatatctatctttatggactgcaatctattctcttcta 39601994  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 39151981 - 39151897
Alignment:
Q  34 taatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 118  Q
    ||||||||||||||||||||||||| |||| | |||  |||||||||| ||||||||| ||||||| |||| |||||||||||||    
T  39151981 taatttcctttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttg 39151897  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 44623687 - 44623617
Alignment:
Q  49 tattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttgt 119  Q
    ||||||| || ||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||    
T  44623687 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttgt 44623617  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 39123621 - 39123536
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatct 103  Q
    |||||| ||||||  || |||||||||||| ||||||||||||||| | ||||| ||||||||||||||| |||||| ||||||||    
T  39123621 attctttcaacataactcatttcctttttcatattttcaagatctttggagcacccctcaatatctctctgtatggagtgcaatct 39123536  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 39214997 - 39214925
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||| ||||  ||||||||||||| || |||||||||||||||||||||| |||| |||||||    
T  39214997 ttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctcctctactt 39214925  T

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Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 39450575 - 39450499
Alignment:
Q  41 ctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||||||| ||| |||| |||||| |||||||||||| |||| ||||||||||||||| | ||||||||||    
T  39450575 ctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttctactt 39450499  T

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Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 27154981 - 27155095
Alignment:
Q  43 ttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcctcaaa 142  Q
    ||||| ||||| |||| |||| | |||||||||||||||||||||||||||||||||||||   ||||||| ||||| | ||  || |||  || |||||    
T  27154981 ttttcatatttccaagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttcttcttgtcttttctttttgaattcttcaaa 27155080  T
Q  143 tgatttttctaccaa 157  Q
    | |||||||||||||    
T  27155081 taatttttctaccaa 27155095  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 39382213 - 39382282
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttcta 114  Q
    |||||||||| ||| |||| ||||||||| ||| ||||||||||||||||||| |||||| |||||||||    
T  39382213 ttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttcta 39382282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 39495534 - 39495611
Alignment:
Q  36 atttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttct 113  Q
    |||||||||||  ||||| |||| |||| | ||| ||||||||||||||||||||||||||||||||||  |||||||    
T  39495534 atttccttttttatatttccaagctctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttct 39495611  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 39199482 - 39199554
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    |||||||||| ||| |||| ||||||||| ||| |||||||||||||||||||||||||  ||||||| ||||    
T  39199482 ttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaatcttttctcttcaactt 39199554  T

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Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 39399013 - 39399085
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||| ||| |||| ||||  ||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  39399013 ttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctcttctcttctactt 39399085  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 39220233 - 39220162
Alignment:
Q  46 tcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||| ||| |||||||| ||||||||| ||| | ||||||||||||||||| ||||| |||||||| ||||    
T  39220233 tcttaatttgaagatctttgcagcactcttcagtttctctctttatggactgtaatcttctctcttcaactt 39220162  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 39391666 - 39391725
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctc 104  Q
    ||||||| |||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||    
T  39391666 ttcttatcttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctc 39391725  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 39479182 - 39479224
Alignment:
Q  69 cactcctcaatatctctctttatggactgcaatctcctctctt 111  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctctt 39479224  T

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Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 44614543 - 44614473
Alignment:
Q  47 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||  ||||||||||||||    
T  44614543 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaattgcctctcttctactt 44614473  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 39161162 - 39161102
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcc 105  Q
    ||||||| |||||| |||| |||||| || ||||||||| |||  ||||||||||||||||    
T  39161162 ttcttatcttcaagctctttgcagcattcttcaatatctttctggatggactgcaatctcc 39161102  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 39208032 - 39208092
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcc 105  Q
    ||||||| |||||| |||| |||||| || ||||||||| |||  ||||||||||||||||    
T  39208032 ttcttatcttcaagctctttgcagcattcttcaatatctttctggatggactgcaatctcc 39208092  T

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Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 19806741 - 19806556
Alignment:
Q  18 attcttccaacatccctaatttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 117  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19806741 attctcccaacataactaatttcctttttcttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T
Q  118 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19806641 gtgtcttgcttctgatatcctcaaatgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatg 19806556  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 44951384 - 44951455
Alignment:
Q  47 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 118  Q
    |||||||||||| ||||||||||||| || ||||||||||||||| | | |||||  |||||||||||||||    
T  44951384 cttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttctacttg 44951455  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 33559695 - 33559636
Alignment:
Q  45 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctc 104  Q
    ||||||| |||||| |||| ||||||||| ||||||||| ||||||  ||||||||||||    
T  33559695 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctc 33559636  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 16112466 - 16112428
Alignment:
Q  75 tcaatatctctctttatggactgcaatctcctctcttct 113  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  16112466 tcaatatctctctttatggactgcaatttcttctcttct 16112428  T

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