View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_high_14 (Length: 247)
Name: NF21302_high_14
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23429087 - 23429316
Alignment:
| Q |
1 |
caagaccatgcttaagtagactaagagagagtagagaaagtgaagatggtagagataaattgttgtcaataggaaatgatgattattgagatatcaatac |
100 |
Q |
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| T |
23429087 |
caagaccatgcttaagtagactaagagagagtagagaaagtgaggatggtagagataaattgttgtcaataggaaatgatgattattgagatatcaatac |
23429186 |
T |
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| Q |
101 |
cgaaaatcgccgcacaactgcttttctttaagccaagataataaaaaatagaaggttttaaatgtacaaatgttaagttaaaagtaccataccttgatat |
200 |
Q |
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| T |
23429187 |
cgaaaatcgccgcacaactgcttttctttaagccaagataataaaaaatagaaggttttaaatgtacaaatgttaagttaaaagtaccataccttgatat |
23429286 |
T |
|
| Q |
201 |
tttcaaatacatgaataggaccataaggat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23429287 |
tttcaaatacatgaataggaccataaggat |
23429316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 24743354 - 24743479
Alignment:
| Q |
3 |
agaccatgcttaagtagactaagagagagtagagaaagtgaagatggtagagataaattgttgtcaataggaaatgatgattattgagatatcaataccg |
102 |
Q |
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| T |
24743354 |
agaccaagattaagcagactaagagagagtagagaaagtgaagatagcagagataaattgttgtaatcaggaaatgatgattatcgagatatca--acaa |
24743451 |
T |
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| Q |
103 |
aaaatcgccgcacaactgcttttcttta |
130 |
Q |
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| T |
24743452 |
aaaatcgccgcacagctgctttgcttta |
24743479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32548497 - 32548570
Alignment:
| Q |
5 |
accatgcttaagtagactaagagagagtagagaaagtgaagatggtagagataaattgttgtcaataggaaatg |
78 |
Q |
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| T |
32548497 |
accatgctaaagcagactaaaagagagtagagaaagtgaagatagcagagataaattgttggcatcaggaaatg |
32548570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 32550164 - 32550196
Alignment:
| Q |
190 |
taccttgatattttcaaatacatgaataggacc |
222 |
Q |
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| T |
32550164 |
taccttgatattttcaaatacatgaataggacc |
32550196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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