View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_high_15 (Length: 243)
Name: NF21302_high_15
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 37804617 - 37804757
Alignment:
| Q |
78 |
accattgaaaacaaatatatttagcatgtttttagagctattgaagaaattgcaagttctaagaaatatataaaagtgtaagagaaattataagagtaac |
177 |
Q |
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| T |
37804617 |
accattgaaaacaaatat--ttagcatgtttttagagctattgaagaaattgcaagttctaagaaatatataaaagtgtaagagaaattataagagtaag |
37804714 |
T |
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| Q |
178 |
aacactatcatgattaaagaaaatgaaagggtcatgcataata |
220 |
Q |
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| T |
37804715 |
aacactatcatgattaaagaaagtgaaaggttcatgcataata |
37804757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 37804541 - 37804588
Alignment:
| Q |
8 |
attaccagttagtgtatctctgtaatcctttttaattatatgtgtgtg |
55 |
Q |
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| T |
37804541 |
attaccagttagtgtatctctgtaatcctttttaattatatgtgtgtg |
37804588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 9799088 - 9799145
Alignment:
| Q |
121 |
aagaaattgcaagttctaagaaatatataaaagtgtaagagaaattataagagtaaca |
178 |
Q |
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| T |
9799088 |
aagaaattgaaagttcagaaaaatatatgaatatgtaagagaaattataagagtaaca |
9799145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 24302329 - 24302289
Alignment:
| Q |
141 |
aaatatataaaagtgtaagagaaattataagagtaacaaca |
181 |
Q |
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| T |
24302329 |
aaatatatgaaagtgtgagagaaattacaagagtaacaaca |
24302289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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