View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_high_4 (Length: 419)
Name: NF21302_high_4
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 230041 - 230198
Alignment:
| Q |
243 |
aatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggaggaggagattgctgaacaggtg |
342 |
Q |
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| T |
230041 |
aatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggaggaggagattgctgaacaggtg |
230140 |
T |
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| Q |
343 |
gaggagaagactgaacgggagggggagtggactgagctggtggaggggaggactgaag |
400 |
Q |
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| T |
230141 |
gaggagaagactgaacgggagggggagtggactgagctggtggaggggatgactgaag |
230198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 229857 - 229925
Alignment:
| Q |
59 |
tccgggagcgggagcatctgatggcgagagcacaggtgccaatgcaggggctttactcttaagcttggc |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229857 |
tccgggagcgggagcatctgatggcgagagcacaggtgccaatgcaggggctttactcttaagcttggc |
229925 |
T |
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