View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_high_8 (Length: 317)
Name: NF21302_high_8
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 25076518 - 25076236
Alignment:
| Q |
24 |
tacaagaaaaatggaaagtttatggtgttattattagcacaaccatcctctattaggtattttgatctccctctagaaccaaggaacaacattaccacat |
123 |
Q |
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| T |
25076518 |
tacaagaaaaatggaaagtttatgatgttatcattagcacaaccgtcctctattaggtattttgatctccctctagaaccaaggaacaacattaccacat |
25076419 |
T |
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| Q |
124 |
cttcttnnnnnnnnnnc------catgggtaagccttttaggtctaagaataaacacaaaccacctgtcattataaatgaaaacactaacactcttacaa |
217 |
Q |
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| T |
25076418 |
cttcttcaaaaaaaaaaaaaaaacatgggtaggccttttagctctaagaataaacacaaaccacctgtcattataaatgaaaacactaacacccttaaga |
25076319 |
T |
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| Q |
218 |
aacctatattaacatagatccattctagtaatgatgtcattgaaactcttagtgactttgatcgatgtcatcaaagctatcat |
300 |
Q |
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| T |
25076318 |
aacctatattaacatagatccattctagtaatgatgtcattgaaactcttagtggctttgatcgatgtcatcaaagctatcat |
25076236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 25075457 - 25075731
Alignment:
| Q |
33 |
aatggaaagtttatggtgttattattagcacaaccatcctctattaggtattttgatctccctctagaaccaaggaacaacattaccacatcttctt--- |
129 |
Q |
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| T |
25075457 |
aatggaaatttgatggtgttattgttagcacaactatcctctagtaggtatgttgatctctctctagaaccaagggataaaatcaccacatgtttttttg |
25075556 |
T |
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| Q |
130 |
----nnnnnnnnnnccatgggtaagccttttaggtctaagaataaacacaaaccacctgtcattataaatgaaaacactaacactcttacaaaacctata |
225 |
Q |
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| T |
25075557 |
aagaaaaaaaaaaactacgggtaggccttttggctccaagaagaaaaccaaacaacctgtcattttaaatgaaaacactaacaccctaatggaacctatt |
25075656 |
T |
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| Q |
226 |
ttaacatagat-ccattctagtaatgatgtcattgaaactcttagtgactttgatcgatgtcatcaaagctatcat |
300 |
Q |
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| T |
25075657 |
ttaacatagatccccttctagaaaaaatgtcatggaaactcttattaacttagatcggtgtcatc-aagctatcat |
25075731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 25096223 - 25096273
Alignment:
| Q |
57 |
ttagcacaaccatcctctattaggtattttgatctccctctagaaccaagg |
107 |
Q |
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| T |
25096223 |
ttagcacaaccatcctctagtaggaatgttgatctccctctataaccaagg |
25096273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 25096493 - 25096421
Alignment:
| Q |
57 |
ttagcacaaccatcctctattaggtattttgatctccctctagaaccaaggaacaacattaccacatcttctt |
129 |
Q |
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| T |
25096493 |
ttagcacaaccatcttctagtgggtatgttgatctccctctagaactaacgcaaaacattacctcatcctctt |
25096421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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