View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_high_9 (Length: 307)
Name: NF21302_high_9
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 25046141 - 25045848
Alignment:
| Q |
1 |
acgaattgttatcacctcgaggaagaaaaaaccaagaaagagattaatttttaatgcgaaaaagggttcaaaatcaaagaaagcatcaacatcaaagaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25046141 |
acgaattgttatcacctcgaggaagaaaaaaccaagaaacagattaatttttaatgcgaaaaagggttcaaaatcaaagaaagcatcaacatcaaagaac |
25046042 |
T |
|
| Q |
101 |
ttatctatgtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgttactgcgttttgtag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25046041 |
ttatctatgtcaaagagggcatcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgttactgtgttttgtag |
25045942 |
T |
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| Q |
201 |
gttgtagtaaag-annnnnnnnnnnnnnnnnnnnncttggtatccagcttaaaaggtgattaatctatctataaatattatgtatgttcttttt |
293 |
Q |
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| T |
25045941 |
gttgtattaaagtattttttttttttttaaaaaaacttggtatccagcttaaaaggtgattaatctatctataaatattatgtatgttattttt |
25045848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 25050533 - 25050325
Alignment:
| Q |
4 |
aattgttatcacctcgaggaagaaaaaaccaagaaagagattaatttttaatgcgaaaaagggttcaaaatcaaagaaagcatcaacatcaaagaactta |
103 |
Q |
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||||||||||||| || |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
25050533 |
aattgttatcaccctgaagaagaaaaaaccaagaaagagatttatttttaatacgaggaagggttcaaaatcaaagaaagcatcaacttcaaataactta |
25050434 |
T |
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| Q |
104 |
tctatgtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgttactgcgttttgtaggtt |
203 |
Q |
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||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||| |
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| T |
25050433 |
tctgtgtcaaagagggcatcaacactgtcacccccgcgagtaattttggctttgccggcaaatcctagaacctaaaatttgttactacgttttgtgggtt |
25050334 |
T |
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| Q |
204 |
gtagtaaag |
212 |
Q |
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||| ||||| |
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| T |
25050333 |
gtattaaag |
25050325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 25050311 - 25050265
Alignment:
| Q |
235 |
cttggtatccagcttaaaaggtgattaatctatctataaatattatg |
281 |
Q |
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||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
25050311 |
cttggtatccaacttaagaggtgattaatctatctttaaatattatg |
25050265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 28682439 - 28682515
Alignment:
| Q |
109 |
gtcaaagagggcctcaacactgccacccccgcgagtaattttggctttgccggcaaatcatagagcctaaaatttgt |
185 |
Q |
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|||||||||||| ||||| ||||||| ||| |||||||||||||||||| || |||| |||||||| |||||| |
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| T |
28682439 |
gtcaaagagggcatcaactttgccacctccgatggtaattttggctttgccgaaaagtcatggagcctaagatttgt |
28682515 |
T |
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