View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_low_12 (Length: 285)
Name: NF21302_low_12
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 435538 - 435342
Alignment:
| Q |
1 |
taggagctaccactttcatagggaattcattgttgttgaaaaaacatgatgttgatgccatcaattaaaacctcctacctttcaaacaaatttgatgttt |
100 |
Q |
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| T |
435538 |
taggagctaccactttcatagggaattcattgttgttgaaaaaacatgatgttgatgccatcaattaaaacctcctacctttcaaacaaatttgatgttt |
435439 |
T |
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| Q |
101 |
tagaaaccaagaaacaatataggtatatgaaaattcaaatcataattagtgttgcacttgtgatgaatgaagaagaaatgtgaatgaaaatataaat |
197 |
Q |
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| T |
435438 |
tagaaaccaaaaaacaatataggtatatgaaaattcaaatcataattagtgttgcacttgtgatgaataaagaagaaatgtgaatgaaaatataaat |
435342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 435342 - 435299
Alignment:
| Q |
227 |
ttagaatttgctatgttcgttatttttgttttaaatgatgtttt |
270 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
435342 |
ttagtatttgctatgttcattatttttgttttaaatgatgtttt |
435299 |
T |
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