View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21302_low_14 (Length: 256)

Name: NF21302_low_14
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21302_low_14
NF21302_low_14
[»] chr6 (2 HSPs)
chr6 (1-94)||(23428954-23429047)
chr6 (165-235)||(23428810-23428880)
[»] chr2 (2 HSPs)
chr2 (170-235)||(28841776-28841841)
chr2 (21-94)||(28841624-28841697)
[»] chr8 (1 HSPs)
chr8 (165-235)||(6832126-6832196)
[»] chr3 (2 HSPs)
chr3 (27-93)||(1423515-1423579)
chr3 (165-200)||(1423401-1423436)
[»] chr4 (2 HSPs)
chr4 (41-94)||(40079241-40079294)
chr4 (174-215)||(40079375-40079417)
[»] chr7 (1 HSPs)
chr7 (27-93)||(41531733-41531799)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23429047 - 23428954
Alignment:
Q  1 gaattgattaattattaaagactttgatgtaatttgatgatgtgaaacaatgtcagttaatgttttgtttgtgtctagttttatagtattaatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23429047 gaattgattaattattaaagactttgatgtaatttgatgatgtgaaacaatgtcagttaatgttttgtttgtgtctagttttatagtattaatg 23428954  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 23428880 - 23428810
Alignment:
Q  165 tgtgtatgaaattttagattaatttatgaaattctgttttatattcatgtatgatatgggagaaactaaaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23428880 tgtgtatgaaattttagattaatttatgaaattctgttttatattcatgtataatatgggagaaactaaaa 23428810  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 28841776 - 28841841
Alignment:
Q  170 atgaaattttagattaatttatgaaattctgttttatattcatgtatgatatgggagaaactaaaa 235  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||| |||||  |||||||||||    
T  28841776 atgaaattttagattaatttatgaaattttgttttaaaatcatgtataatatgcaagaaactaaaa 28841841  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 28841624 - 28841697
Alignment:
Q  21 actttgatgtaatttgatgatgtgaaacaatgtcagttaatgttttgtttgtgtctagttttatagtattaatg 94  Q
    |||||||||||||||||| |||||||||||||  | ||| |||||  |||||||||||||||||  ||||||||    
T  28841624 actttgatgtaatttgattatgtgaaacaatgatatttagtgtttattttgtgtctagttttatgatattaatg 28841697  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 6832196 - 6832126
Alignment:
Q  165 tgtgtatgaaattttagattaatttatgaaattctgttttatattcatgtatgatatgggagaaactaaaa 235  Q
    ||||||||||||||||||||||||||| ||||||| ||||||  |||||||| ||||   |||||||||||    
T  6832196 tgtgtatgaaattttagattaatttataaaattctattttatcatcatgtataatatataagaaactaaaa 6832126  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 1423579 - 1423515
Alignment:
Q  27 atgtaatttgatgatgtgaaacaatgtcagttaatgttttgtttgtgtctagttttatagtattaat 93  Q
    |||||||||||| |||||||||||||   |||||||||| |||  ||||||||||||||||||||||    
T  1423579 atgtaatttgattatgtgaaacaatgatggttaatgtttagtt--tgtctagttttatagtattaat 1423515  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 1423436 - 1423401
Alignment:
Q  165 tgtgtatgaaattttagattaatttatgaaattctg 200  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1423436 tgtgtgtgaaattttagattaatttatgaaattctg 1423401  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 40079241 - 40079294
Alignment:
Q  41 tgtgaaacaatgtcagttaatgttttgtttgtgtctagttttatagtattaatg 94  Q
    |||||||||||  |||||||||||| |||||||||||||||||  |||||||||    
T  40079241 tgtgaaacaataacagttaatgtttagtttgtgtctagttttacggtattaatg 40079294  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 40079375 - 40079417
Alignment:
Q  174 aattttagatt-aatttatgaaattctgttttatattcatgta 215  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  40079375 aattttagatttaatttatgaaattctgttttataatcatgta 40079417  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 41531799 - 41531733
Alignment:
Q  27 atgtaatttgatgatgtgaaa--caatgtcagttaatgttttgtttgtgtctagttttatagtattaat 93  Q
    |||||||||||| ||||||||  ||||| ||||||||||||  |||||  |||||||||||||||||||    
T  41531799 atgtaatttgattatgtgaaaaacaatgacagttaatgtttaatttgt--ctagttttatagtattaat 41531733  T

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