View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_low_17 (Length: 242)
Name: NF21302_low_17
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42268932 - 42269154
Alignment:
| Q |
1 |
cacctaactacatgccattggatatattgacgggttgagaaggtttcttctacaaggatgcaaatcactgaagatggaatcaaagatcagcctatttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
42268932 |
cacctaactacatgccattggatatattgacgggttgagaaggtttcttctacaaggatgcaaatcactgaagatggaatcaaaaatcaacctatttcag |
42269031 |
T |
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| Q |
101 |
aaaatgaatctgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgtaaggagaaacaaaaaagaccg |
200 |
Q |
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| T |
42269032 |
aaaatgaatatgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgtaaggagaaacaaaaaagaccg |
42269131 |
T |
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| Q |
201 |
aaaggtagtaaatccatcaatgc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42269132 |
aaaggtagtaaatccatcaatgc |
42269154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42280703 - 42280925
Alignment:
| Q |
1 |
cacctaactacatgccattggatatattgacgggttgagaaggtttcttctacaaggatgcaaatcactgaagatggaatcaaagatcagcctatttcag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42280703 |
cacctaactacatgccattggatatattgacaggttgagaaggtttgttcaacaaggatgcaaatcactgaagatggaatcaaagatcaacctatttcag |
42280802 |
T |
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| Q |
101 |
aaaatgaatctgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgtaaggagaaacaaaaaagaccg |
200 |
Q |
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| T |
42280803 |
aaaatgaatctgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgcgaggagaaacaaaaaagatca |
42280902 |
T |
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| Q |
201 |
aaaggtagtaaatccatcaatgc |
223 |
Q |
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| T |
42280903 |
aaaggtagtaaaaccatcaatgc |
42280925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 42260040 - 42260139
Alignment:
| Q |
105 |
tgaatctgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgtaaggagaaacaaaaaagaccgaaag |
204 |
Q |
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||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||| |||||| |
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| T |
42260040 |
tgaatctgaaggatgtgcaagtaatgtcatggaccagggtcagcaggataggccaaaagtgtttaagatcgatgtaaggaaaaacaaaaaagatcgaaag |
42260139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42254445 - 42254533
Alignment:
| Q |
1 |
cacctaactacatgccattggatatattgacgggttgagaaggtttcttctacaaggatgcaaatcactgaagatggaatcaaagatca |
89 |
Q |
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| T |
42254445 |
cacccaactacatgccattggatatattggcaggttgagaaggtttgttcaacaaggatgcacatcagtaaggatggaatcaaggatca |
42254533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 488875 - 488974
Alignment:
| Q |
105 |
tgaatctgagggatgtgcaagtgatgtcaaggaccagggtcagcaggataggcccaaagtgttgaagatctatgtaaggagaaacaaaaaagaccgaaag |
204 |
Q |
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||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||| |||||| |
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| T |
488875 |
tgaatctgaaggatgtgcaagtaatgtcatggaccagggtcagcaggataggccaaaagtgtttaagatcgatgtaaggaaaaacaaaaaagatcgaaag |
488974 |
T |
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