View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_low_2 (Length: 444)
Name: NF21302_low_2
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 1272806 - 1272388
Alignment:
| Q |
8 |
cgaagaatatgattgtttctttccttacaaagaatccaaacaaacagtatccatatcaaatgaagatcaaatttttctcgagtcgcctgtttaatttgta |
107 |
Q |
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| T |
1272806 |
cgaaaaatacgattgtttctttccttccaaagaatccaaacaaacactatccatatcaaatgaagaccaaatttttctcgagtcgcctgtttcatttgta |
1272707 |
T |
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| Q |
108 |
aattgtgcaaaatgatcaaaaatatgtaatatgtccgcagtagaaataccaagtcaatgttgaagaaatatccatatgccacctaaataagcacaaccca |
207 |
Q |
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| T |
1272706 |
aattgtgcaaaatgatcaaaaatatgtaatatgtccgcagtagaaataccaagtcaatgttgaagaaatatccatatgccacctaaataagcacaaccca |
1272607 |
T |
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| Q |
208 |
caaataaatgatcgatactttcctccttttcacaaccactcgaacaaagaactgaggttgtagttaaaattccatgatgaaccagcttatccttcattgc |
307 |
Q |
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| T |
1272606 |
caaataaatgatcgatactttcctccttttcacaaccactcgaacaaagaaatgaggttgtagttaaaattccatgatgaaccagcttatccttcattgc |
1272507 |
T |
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| Q |
308 |
caattgattgagaagcaaccaccacacggacaaagagaccttcaaatgcaccactttatttcaaaaagtagcatagaagacataactatcatgctacatc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1272506 |
caattgattgagaagcaaccaccacacggacaaagagaccttcaaatgcaccactttatttcaaaaagtagcatagaagacataactatcatgctacatc |
1272407 |
T |
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| Q |
408 |
acaaaagaaacaaacaata |
426 |
Q |
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| T |
1272406 |
acaaaagaaacaaacaata |
1272388 |
T |
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