View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_low_3 (Length: 443)
Name: NF21302_low_3
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_low_3 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 31053285 - 31052890
Alignment:
| Q |
1 |
aactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttctttctatttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053285 |
aactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttctttctatttat |
31053186 |
T |
|
| Q |
101 |
ctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgctgatcaatat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053185 |
ctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgctgatcaatat |
31053086 |
T |
|
| Q |
201 |
gtaagatattatgaccaaaattcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053085 |
gtaagatattatgaccaaaattcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaac |
31052986 |
T |
|
| Q |
301 |
tagcatacattctaattgctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaaccaacatctgccatttaaa |
396 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052985 |
tagcatacactctaattgctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaaccaacatctgccatttaaa |
31052890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 169964 - 170341
Alignment:
| Q |
1 |
aactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttctttctatttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
169964 |
aactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttctttctatttat |
170063 |
T |
|
| Q |
101 |
ctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgctgatcaatat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
170064 |
ctcatcttttatgtaactgtcatgattctagccttctgatgcaagtttcattgatattctaactttacgatgtcatggtttcatgattgctgatgaatat |
170163 |
T |
|
| Q |
201 |
gtaagatattatgaccaaaattcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaac |
300 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170164 |
gtaagatattatgaccaaagttcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaac |
170263 |
T |
|
| Q |
301 |
tagcatacattctaattgctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaac |
378 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
170264 |
tagcatacactctaattgctaacaaactaactgcaatcgcaagttatcacatagctatccgattcattctgcttcaac |
170341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 5380313 - 5380121
Alignment:
| Q |
74 |
agagatatatattttctttctatttatctcctcttttatgtaactgtcat-gattctagccttctgatgcaagtctcattgatattctaactttacgatg |
172 |
Q |
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|||| ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||| | || |
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| T |
5380313 |
agaggtatatattttcttgctatttatctcctctgt---gtaactgtcattgattctagccttctggtgcaagtttgattgatattctaactttatgttg |
5380217 |
T |
|
| Q |
173 |
tcatggtttcatgattgctga-tcaa-----tatgta--agatattatgaccaaaattcattcataagaacaaaatggtggcagagaaggatgaaa |
260 |
Q |
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| |||||||||||||| ||| |||| ||||| | ||| |||||||||| ||||||||||||||||| ||| | |||||||||||||||| |
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|
| T |
5380216 |
ttatggtttcatgattcgtgattcaaaaatccatgtatgacataatatgaccaaagttcattcataagaacaagatgttagcagagaaggatgaaa |
5380121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 5345212 - 5345344
Alignment:
| Q |
131 |
gccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgat---tgctgatcaatatgtaagatattatgaccaaaattcattc |
227 |
Q |
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|
|||||||||||||||| | |||||||||||||||| | | ||||||||||||||||| || | | ||||||||| ||| ||||||||| ||||||| |
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| T |
5345212 |
gccttctgatgcaagtttgattgatattctaacttaatgttgtcatggtttcatgatccgtgattaaaaatatgtaacataacatgaccaaagttcattc |
5345311 |
T |
|
| Q |
228 |
ataagaacaaaatggtggcagagaaggatgaaa |
260 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| |
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|
| T |
5345312 |
ataagaaataaatggtagcagagaaggatgaaa |
5345344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 5364313 - 5364166
Alignment:
| Q |
131 |
gccttctgatgcaagtctcattgatattctaactttacgatgtca---tggtttcatgattgctgat---caatatgtaagatattatgaccaaaattca |
224 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||| |||| ||||||||| ||| ||| | |||| |||| |
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| T |
5364313 |
gccttctgatgcaagtttgattgatattctaactttatgttgtcatggtggtttcatgattcgtgattaaaaatatgtaacataatat-aacaaagttca |
5364215 |
T |
|
| Q |
225 |
ttcataagaacaaaatggtggcagagaaggatgaaactggatccatata |
273 |
Q |
| |
|
|| ||||||||||||| || ||||| |||||||||| || || |||||| |
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|
| T |
5364214 |
tttataagaacaaaattgtagcagaaaaggatgaaattgaattcatata |
5364166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 5422726 - 5422786
Alignment:
| Q |
318 |
gctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaac |
378 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
5422726 |
gctaacaaactaactgcaattttaagctatcagatagctatcagattccttctgcttcaac |
5422786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 5345470 - 5345534
Alignment:
| Q |
314 |
aattgctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaac |
378 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||| ||||||| |
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|
| T |
5345470 |
aattgctaacgaactaactgcaatagtaagctatcttatagctatcatattcgttcttcttcaac |
5345534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 5364041 - 5363977
Alignment:
| Q |
314 |
aattgctaacaaactaactgcaatcgtaagctatcacatagctatccgattcgttctgcttcaac |
378 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
5364041 |
aattgctaaagaactaactgcaacattaagctatcacatagctatcagattcgttcttcttcaac |
5363977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 5364108 - 5364062
Alignment:
| Q |
270 |
tataatagaactgaaagggttgcagagaaactagcatacattctaat |
316 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||||| |
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|
| T |
5364108 |
tataatagaactgaaatggtagcagagaaactttcatacattctaat |
5364062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 6481 - 6428
Alignment:
| Q |
10 |
ataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaa |
63 |
Q |
| |
|
|||||| |||||| ||||||||||| ||| |||||| ||||| ||||||||||| |
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|
| T |
6481 |
ataagaagtaccaatgcttgcatcagaatcatttcattgtaggttagtagctaa |
6428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 20334797 - 20334756
Alignment:
| Q |
318 |
gctaacaaactaactgcaatcgtaagctatcacatagctatc |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
20334797 |
gctaacaaactaactgcaattttaagctatcagatagctatc |
20334756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 20334762 - 20334726
Alignment:
| Q |
342 |
agctatcacatagctatccgattcgttctgcttcaac |
378 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
20334762 |
agctatcagatagctatcagattcgttctgcttcaac |
20334726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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