View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21302_low_4 (Length: 437)
Name: NF21302_low_4
Description: NF21302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21302_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28586312 - 28586099
Alignment:
| Q |
1 |
tttatattagctctcgcctatgtcacttccagaagtcctcatttatccgacttagtttagtcattctccttgggcatttaaaatattgcactagactatg |
100 |
Q |
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| T |
28586312 |
tttatattagctcttggttgtgtcacgtccagaagtcctcatttatccgacttagtttagtcattctccatgggcatttaaaatattgcactagactatg |
28586213 |
T |
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| Q |
101 |
atgcattcaaatattactcaagagtatggttgccaaaatcgaaatcccgctaaaaattgaggatatagaaaaagcgtagatcataggattgtaacaaagg |
200 |
Q |
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| T |
28586212 |
atgcattcaaatattactctagagtatggttgccaaaatcgaaatcccactaaaaattgatggtatagaaaaagcgtagatcataggatcgtaataaaga |
28586113 |
T |
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| Q |
201 |
tcataatatcccac |
214 |
Q |
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| T |
28586112 |
tcgtaatatcccac |
28586099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 28585928 - 28585876
Alignment:
| Q |
378 |
gttcaacaagacattatgatcaagcccgacatctttcataatttcttcatctc |
430 |
Q |
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| T |
28585928 |
gttcaacaaaacattatgatcaagcccgacatctttcataatttcttcatctc |
28585876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 28586039 - 28585997
Alignment:
| Q |
270 |
ctttcattaatcataatttttattgtcttaagcatcatctaag |
312 |
Q |
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| T |
28586039 |
ctttcattaatcataattttcattgtcttaagcatcatctaag |
28585997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 6739386 - 6739444
Alignment:
| Q |
165 |
atagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
223 |
Q |
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| T |
6739386 |
atagaaagagcgtagatcataggatcgtaacaaggatcgtaagctcccacctaatagac |
6739444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 41708551 - 41708650
Alignment:
| Q |
126 |
atggttgccaaaatcgaaatcccgctaaaaattga--ggatatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
223 |
Q |
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| T |
41708551 |
atggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccacctaatagac |
41708650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 36653218 - 36653120
Alignment:
| Q |
126 |
atggttgccaaaatcgaaatcccgctaaaaat--tgaggatatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
223 |
Q |
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| T |
36653218 |
atggttgtcaaaatcgggatcccactaaagatcgtgagg-tatagaaaaagcgtagatcgtaggatcgtaacaaggatcgtaagatcccatataatagac |
36653120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 44266565 - 44266624
Alignment:
| Q |
164 |
tatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
223 |
Q |
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|||||||| |||||||||| |||||| ||||||| | || ||| |||||||||||||||| |
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| T |
44266565 |
tatagaaagagcgtagatcgtaggatcgtaacaaggatcgtaagatcccacctaatagac |
44266624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 49835128 - 49835074
Alignment:
| Q |
168 |
gaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaataga |
222 |
Q |
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||||||||||||||| |||||| ||||||||| || ||| |||||||| |||||| |
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| T |
49835128 |
gaaaaagcgtagatcgtaggatcgtaacaaagatcgtaagatcccaccaaataga |
49835074 |
T |
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