View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_high_11 (Length: 278)

Name: NF21303_high_11
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21303_high_11
NF21303_high_11
[»] chr1 (4 HSPs)
chr1 (1-260)||(44662416-44662676)
chr1 (142-253)||(44684974-44685083)
chr1 (27-69)||(42919709-42919751)
chr1 (1-69)||(38565000-38565068)
[»] chr4 (3 HSPs)
chr4 (139-256)||(29339633-29339748)
chr4 (148-256)||(29352795-29352903)
chr4 (26-59)||(1799254-1799287)
[»] chr5 (1 HSPs)
chr5 (28-72)||(1918454-1918498)
[»] scaffold0224 (1 HSPs)
scaffold0224 (27-69)||(18580-18622)
[»] chr8 (2 HSPs)
chr8 (26-55)||(23264820-23264849)
chr8 (26-58)||(36796715-36796747)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 44662416 - 44662676
Alignment:
Q  1 aaaaaagcagccggcgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtca-tctataaatgtcaatcaataagagatt 99  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  44662416 aaaaaagtagccgacgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtcggtctataaatgtcaatcaataagagatt 44662515  T
Q  100 gaattaattgtctacaaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44662516 gaattaattgtctacaaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtactt 44662615  T
Q  200 ggttatagtctgagcatagtgagcaattactgcatccaaattggcatctgtttcacctatg 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44662616 ggttatagtctgagcatagtgagcaattattgcatccaaattggcatctgtttcacctatg 44662676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 44684974 - 44685083
Alignment:
Q  142 ctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaatt 241  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||| | ||||||| || |||||||||  |||||| ||||||||| ||||||||||||    
T  44684974 ctaaatatagaaaaat--gaagcaccaaaaccctacctaagttacgtaagttgtacttgtttatagtctccgcatagcgagcaattattgcatccaaatt 44685071  T
Q  242 ggcatctgtttc 253  Q
    ||||||| ||||    
T  44685072 ggcatctttttc 44685083  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 42919709 - 42919751
Alignment:
Q  27 gcttcaaacgatcagattcgaccaccactcaaaatccgataag 69  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  42919709 gcttcaaacgatcagagtcgcccaccactcaacatccgataag 42919751  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38565068 - 38565000
Alignment:
Q  1 aaaaaagcagccggcgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataag 69  Q
    ||||||||||||| ||| | || | ||||||||||||||||| ||| ||||| ||||| ||| ||||||    
T  38565068 aaaaaagcagccgacgacgatatgttgcttcaaacgatcagaatcgcccaccgctcaacatctgataag 38565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 29339748 - 29339633
Alignment:
Q  139 tatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaa 238  Q
    |||||||||||||||||||   ||||| ||||| || ||||||||| |||| ||||||| || |||||||||   ||||||||| |||||||||||| ||    
T  29339748 tatctaaagatagaaaaatc--aagcatcaaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaa 29339651  T
Q  239 attggcatctgtttcacc 256  Q
    ||||||||| ||||||||    
T  29339650 attggcatcagtttcacc 29339633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 29352903 - 29352795
Alignment:
Q  148 atagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaattggcatc 247  Q
    ||||| ||| || ||||| ||||| |||||||||||||| || ||||||  || |||||||||   |||||||||||||||||||||| |||||||||||    
T  29352903 atagagaaaaatcaagcatcaaaaacctacctaagttacacaagttgtatttgtttatagtctccacatagtgagcaattactgcatctaaattggcatc 29352804  T
Q  248 tgtttcacc 256  Q
     ||||||||    
T  29352803 agtttcacc 29352795  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 1799287 - 1799254
Alignment:
Q  26 tgcttcaaacgatcagattcgaccaccactcaaa 59  Q
    |||||||||||||||| |||||||||||||||||    
T  1799287 tgcttcaaacgatcagcttcgaccaccactcaaa 1799254  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 1918498 - 1918454
Alignment:
Q  28 cttcaaacgatcagattcgaccaccactcaaaatccgataagtca 72  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  1918498 cttcaaacgatcagattcgaccaccactcaacatccgatatgtca 1918454  T

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Target: scaffold0224 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 18622 - 18580
Alignment:
Q  27 gcttcaaacgatcagattcgaccaccactcaaaatccgataag 69  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  18622 gcttcaaacgatcagagtcgcccaccactcaacatccgataag 18580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 23264849 - 23264820
Alignment:
Q  26 tgcttcaaacgatcagattcgaccaccact 55  Q
    ||||||||||||||||||||||||||||||    
T  23264849 tgcttcaaacgatcagattcgaccaccact 23264820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 36796747 - 36796715
Alignment:
Q  26 tgcttcaaacgatcagattcgaccaccactcaa 58  Q
    |||||||||||||||||| ||||||||||||||    
T  36796747 tgcttcaaacgatcagatgcgaccaccactcaa 36796715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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