View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_high_6 (Length: 414)
Name: NF21303_high_6
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 39561357 - 39560952
Alignment:
| Q |
9 |
gacatcatcactgcaatcatcaaaccactagttgatgaaattagtggttaaatgacataactgaagttaggacaacttactttttccaatatatatgaat |
108 |
Q |
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| T |
39561357 |
gacatcatcactgcaatcatcaaaccactagttgatgaaattagtggttaaatgacataactgaagttaggacaacttactttttccaatatatatgaat |
39561258 |
T |
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| Q |
109 |
aaataaccaatgaatatattcaatgcataaaaatgtatttctgaccttgccatactttgccaacttgatttttgatattgactttgttaggggcagcagt |
208 |
Q |
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| T |
39561257 |
aaataaccaatcaatatattcaatgcataaaaatgtatttctgaccttgccatactttgccaacttgatttttgatattgactttgttaggggcagcagt |
39561158 |
T |
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| Q |
209 |
ggaagatttatcttggcctaagatattgctcaaaacattttcattagtttaaagagataaggaggaggttaaattcagaacggtttgttgaactttacaa |
308 |
Q |
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| T |
39561157 |
ggaagatttatcttggcctaagatattgctcaaaacattttcattagtttaaagagataaggaggaggttaaattcagaacggtttattgaactttacaa |
39561058 |
T |
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| Q |
309 |
gcagtaaggtgtttgaaataaagaaatcatttgtgaaattgaatcagttgtcaaaatcacttgaaatttcgaaagaacaagatcttacaggtatactaga |
408 |
Q |
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| T |
39561057 |
gcagtaaggtgtttgaaataaagaagtcatttgtgaaattgaataagttgtcaaaatcacttgaaatttcgaaagaacaagatcttacaggtatactaga |
39560958 |
T |
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| Q |
409 |
gggctg |
414 |
Q |
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| T |
39560957 |
gggctg |
39560952 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 44422317 - 44422243
Alignment:
| Q |
9 |
gacatcatcactgcaatcatcaaaccactagttgatgaaattagtggttaaatgacataactgaagttaggacaa |
83 |
Q |
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|||||||| ||||||||||||||||||||| | |||| || ||||||||||| |||||| ||| ||||| |||| |
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| T |
44422317 |
gacatcattactgcaatcatcaaaccactaatagatggaagtagtggttaaagaacataaatgacgttagaacaa |
44422243 |
T |
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