View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_low_1 (Length: 603)

Name: NF21303_low_1
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21303_low_1
NF21303_low_1
[»] chr8 (10 HSPs)
chr8 (21-588)||(39560335-39560902)
chr8 (476-586)||(30011756-30011866)
chr8 (518-586)||(16527480-16527548)
chr8 (518-583)||(26762855-26762920)
chr8 (535-586)||(29705899-29705950)
chr8 (535-584)||(3017472-3017521)
chr8 (535-584)||(26819287-26819336)
chr8 (535-579)||(10744263-10744307)
chr8 (532-569)||(25467268-25467305)
chr8 (535-579)||(43059459-43059503)
[»] chr3 (4 HSPs)
chr3 (103-172)||(44421762-44421831)
chr3 (535-589)||(43220817-43220871)
chr3 (532-562)||(51499555-51499585)
chr3 (535-591)||(25764287-25764341)
[»] chr6 (6 HSPs)
chr6 (535-580)||(31650308-31650353)
chr6 (535-586)||(8782980-8783029)
chr6 (535-579)||(25094713-25094757)
chr6 (533-587)||(22015234-22015288)
chr6 (535-584)||(18361299-18361348)
chr6 (535-579)||(733595-733639)
[»] chr1 (9 HSPs)
chr1 (495-584)||(24126869-24126957)
chr1 (518-567)||(15867621-15867670)
chr1 (532-575)||(51106782-51106825)
chr1 (547-577)||(32408103-32408133)
chr1 (535-564)||(32102333-32102362)
chr1 (518-559)||(39744590-39744631)
chr1 (547-579)||(14303962-14303994)
chr1 (532-588)||(32218202-32218258)
chr1 (542-586)||(45112080-45112124)
[»] chr5 (8 HSPs)
chr5 (535-586)||(16230775-16230826)
chr5 (538-586)||(16215415-16215463)
chr5 (535-579)||(36261994-36262038)
chr5 (535-586)||(35035574-35035625)
chr5 (535-586)||(36639767-36639818)
chr5 (518-579)||(18871000-18871061)
chr5 (520-556)||(16290196-16290232)
chr5 (542-578)||(16962206-16962242)
[»] chr7 (7 HSPs)
chr7 (538-584)||(35169981-35170027)
chr7 (535-578)||(5376313-5376356)
chr7 (539-575)||(18580353-18580389)
chr7 (541-591)||(18577504-18577552)
chr7 (535-586)||(36853112-36853163)
chr7 (541-575)||(24547743-24547777)
chr7 (545-586)||(46766088-46766129)
[»] chr4 (6 HSPs)
chr4 (477-575)||(40611987-40612085)
chr4 (535-586)||(6468678-6468729)
chr4 (532-574)||(18966004-18966046)
chr4 (501-563)||(51125845-51125907)
chr4 (518-565)||(17123220-17123267)
chr4 (535-579)||(55713752-55713796)
[»] chr2 (5 HSPs)
chr2 (534-575)||(33295059-33295100)
chr2 (515-579)||(5129644-5129708)
chr2 (536-588)||(44250656-44250708)
chr2 (533-587)||(44325342-44325396)
chr2 (541-577)||(35196106-35196142)


Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 21 - 588
Target Start/End: Complemental strand, 39560902 - 39560335
Alignment:
Q  21 tattaaaatctgtaaagccaatgttaaagtttacttgaagaaaaaatagcacagaaaggataactactaacgtgatgagtgaatcctcaacagtgcctgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39560902 tattaaaatctgtaaagccaatgttaaagtttacttgaagaaaaaatagcacagaaaggataactactaacgtgatgagtgaatcctcaacagtgcctgc 39560803  T
Q  121 tagtattcccaccataccaactgtccagtttagaggaataactctgaatgtaacaaaatatcattcttctaaaatcattacaaattacaatattccaaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39560802 tagtattcccaccataccaactgtccagtttagaggaataactctgaatgtaacaaaatatcattcttctaaaatcattacaaattacaatattccaaaa 39560703  T
Q  221 gtatatatcagcatgatgaaaggtgattgaatactcacccagaatgaggtatacgactgaaagtcggtttcagaccaactataccacaaagtgcagcagg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39560702 gtatatatcagcatgatgaaaggtgattgaatactcacccagaatgaggtatacgactgaaagtcggtttcagaccaactataccacaaagtgctgcagg 39560603  T
Q  321 catcctcacagagcctggacagatatatgcaaagaaaatattacttcactaacttttgttgttgatatgtatattgcagactaaaatttcatgcacctat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39560602 catcctcacagagcctggacagatatatgcaaagaaaatattacttcactaacttttgttgttgatatgtatattgcagactaaaatttcatgcacctat 39560503  T
Q  421 catatgaacatatttggtaatttcgtatcactttggttagaaaataaagggttggattcatataaactgtcggggtaaatattttttacactaacagtca 520  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39560502 gatatgaacatatttggtaatttcgtatcactttggttagaaaataaagggttggattcatataaactgtccgggtaaatattttttacactaacagtca 39560403  T
Q  521 atcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatat 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39560402 atcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatat 39560335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 586
Target Start/End: Complemental strand, 30011866 - 30011756
Alignment:
Q  476 attcatataaactgtcggggtaaatattttttacactaacagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaa 575  Q
    ||||||||| |||||| |  |||| ||||||||||||  || |||||| || |   |||| ||||||||||||||||||| |||||||||||||||||||    
T  30011866 attcatatacactgtcagtttaaacattttttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaa 30011767  T
Q  576 gtcatacatat 586  Q
     ||| ||||||    
T  30011766 atcacacatat 30011756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 518 - 586
Target Start/End: Complemental strand, 16527548 - 16527480
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    ||||||||||||| || |||||||| || |||||| |||| || |||||||||||||||||||||||||    
T  16527548 tcaatcgtaatcatcagatcattaagaacgtttgagtttagtcgtaactacttctaaagtcatacatat 16527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 583
Target Start/End: Original strand, 26762855 - 26762920
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtcataca 583  Q
    |||||| |||||  || |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  26762855 tcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtcataca 26762920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 29705899 - 29705950
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    ||||||| ||| |||||||||| |||||||| ||||||||||||||||||||    
T  29705899 atcattataaacgtttgacttttatcataaccacttctaaagtcatacatat 29705950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 3017521 - 3017472
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 584  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| ||||    
T  3017521 atcattaaaaaagtttgactttaatcataactactttgaaagtcacacat 3017472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 26819287 - 26819336
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 584  Q
    |||||||||||||||||||||| |||  ||||||||||||||||| ||||    
T  26819287 atcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacat 26819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 10744263 - 10744307
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||||    
T  10744263 atcattaaaaacgtttgactttaattataactgcttctaaagtca 10744307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Original strand, 25467268 - 25467305
Alignment:
Q  532 catatcattaaaaatgtttgactttaatcataactact 569  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  25467268 catatcataaaaaatgtttgacttaaatcataactact 25467305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 43059459 - 43059503
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    ||||| |||||  |||||||||||| |||||||||||||||||||    
T  43059459 atcatcaaaaaactttgactttaataataactacttctaaagtca 43059503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 44421831 - 44421762
Alignment:
Q  103 atcctcaacagtgcctgctagtattcccaccataccaactgtccagtttagaggaataactctgaatgta 172  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||    
T  44421831 atcctcaacagtgcctgctagtattccaaccattccaactgtccagtttataggaagaactctgaatgta 44421762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 43220871 - 43220817
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatatg 589  Q
    |||| |||||| ||||||||||||||||||  ||||||||||||||| |||||||    
T  43220871 atcaataaaaacgtttgactttaatcataatcacttctaaagtcatatatatatg 43220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 532 - 562
Target Start/End: Complemental strand, 51499585 - 51499555
Alignment:
Q  532 catatcattaaaaatgtttgactttaatcat 562  Q
    |||||||||||||||||||||||||||||||    
T  51499585 catatcattaaaaatgtttgactttaatcat 51499555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 591
Target Start/End: Original strand, 25764287 - 25764341
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatatgat 591  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||  |||||||||||    
T  25764287 atcattaaaaatatttgtctttaatcatatctactactaaagtc--acatatatgat 25764341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 535 - 580
Target Start/End: Original strand, 31650308 - 31650353
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcat 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31650308 atcattaaaaatgtttgactttaatcataactacttctaaagtcat 31650353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 8782980 - 8783029
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| ||||    
T  8782980 atcattaaaaat--ttgactttaatcataactacttcaaaagtcatatatat 8783029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 25094757 - 25094713
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||    
T  25094757 atcattaaacatgtttgactttaatcataagtacttttaaagtca 25094713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 533 - 587
Target Start/End: Complemental strand, 22015288 - 22015234
Alignment:
Q  533 atatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatata 587  Q
    ||||||||||||||||  ||||||||||||| ||| ||||||||| | |||||||    
T  22015288 atatcattaaaaatgtaagactttaatcatatctatttctaaagttacacatata 22015234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 18361348 - 18361299
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 584  Q
    ||||||||||| |||| |||||||||||||||||||  ||||||| ||||    
T  18361348 atcattaaaaacgtttaactttaatcataactactttgaaagtcacacat 18361299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 733595 - 733639
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||||    
T  733595 atcattaaaaacgtccgactttaatcgtaactacttctaaagtca 733639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 584
Target Start/End: Original strand, 24126869 - 24126957
Alignment:
Q  495 gtaaatattttttacactaacagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 584  Q
    |||||||| |||||||||| || |||||| |||||| || |||||||||||  ||||||||||| |||||||||||||||| ||| ||||    
T  24126869 gtaaatatcttttacactatcaatcaatcttaatcatcagatcattaaaaa-atttgactttaaacataactacttctaaaatcaaacat 24126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 567
Target Start/End: Complemental strand, 15867670 - 15867621
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataacta 567  Q
    |||||| |||||  ||||||||||||| ||||||||||||||||||||||    
T  15867670 tcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 575
Target Start/End: Original strand, 51106782 - 51106825
Alignment:
Q  532 catatcattaaaaatgtttgactttaatcataactacttctaaa 575  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||    
T  51106782 catatcaattaaaatgtttgactttaatcataattacttctaaa 51106825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 547 - 577
Target Start/End: Original strand, 32408103 - 32408133
Alignment:
Q  547 gtttgactttaatcataactacttctaaagt 577  Q
    |||||||||||||||||||||||||||||||    
T  32408103 gtttgactttaatcataactacttctaaagt 32408133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 564
Target Start/End: Original strand, 32102333 - 32102362
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataa 564  Q
    ||||||||||||||||||||||||||||||    
T  32102333 atcattaaaaatgtttgactttaatcataa 32102362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 39744590 - 39744631
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaat 559  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  39744590 tcaatcatattcaccgtatcattaaaaatgtttgactttaat 39744631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 14303962 - 14303994
Alignment:
Q  547 gtttgactttaatcataactacttctaaagtca 579  Q
    |||||||||||||||||||||||| ||||||||    
T  14303962 gtttgactttaatcataactacttttaaagtca 14303994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 32218258 - 32218202
Alignment:
Q  532 catatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatat 588  Q
    |||||| ||||||| |||  || ||||||||||||| ||||||||||||| ||||||    
T  32218258 catatcgttaaaaacgttaaacattaatcataactatttctaaagtcatagatatat 32218202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 586
Target Start/End: Original strand, 45112080 - 45112124
Alignment:
Q  542 aaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||||||||||||||||| ||||||| || |||||| ||||||||    
T  45112080 aaaatgtttgactttaattataactatttttaaagttatacatat 45112124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 16230826 - 16230775
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  16230826 atcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatat 16230775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 586
Target Start/End: Original strand, 16215415 - 16215463
Alignment:
Q  538 attaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  16215415 attaaaaatgtttgacttgaatcgtaactacttctaaagttatatatat 16215463  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 36262038 - 36261994
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    |||||||||||  |||| |||||||||||||||||||||||||||    
T  36262038 atcattaaaaacatttggctttaatcataactacttctaaagtca 36261994  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 35035574 - 35035625
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||| ||||||| ||||| |||||||||||||||||||||| ||| ||||||    
T  35035574 atcaataaaaatatttgattttaatcataactacttctaaaatcacacatat 35035625  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 36639818 - 36639767
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||||||| || |||| | |||||||||||||||||||||||||| ||||||    
T  36639818 atcattaagaacgtttcaatttaatcataactacttctaaagtcacacatat 36639767  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 579
Target Start/End: Original strand, 18871000 - 18871061
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    |||||||||||   || ||||||||| | ||||||| ||||| |||||||||||||||||||    
T  18871000 tcaatcgtaattgtcagatcattaaacacgtttgaccttaatgataactacttctaaagtca 18871061  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 16290232 - 16290196
Alignment:
Q  520 aatcgtaatcaccatatcattaaaaatgtttgacttt 556  Q
    |||| |||||| |||||||||||||||||||||||||    
T  16290232 aatcataatcaacatatcattaaaaatgtttgacttt 16290196  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 16962206 - 16962242
Alignment:
Q  542 aaaatgtttgactttaatcataactacttctaaagtc 578  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  16962206 aaaacgtttgactttaatcataactatttctaaagtc 16962242  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 538 - 584
Target Start/End: Original strand, 35169981 - 35170027
Alignment:
Q  538 attaaaaatgtttgactttaatcataactacttctaaagtcatacat 584  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  35169981 attaaagatgtttgactttaatcataactacttctaaagtcacacat 35170027  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 578
Target Start/End: Original strand, 5376313 - 5376356
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtc 578  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  5376313 atcattaaaaacgtttgactgtaatcataactacttctaaagtc 5376356  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 18580389 - 18580353
Alignment:
Q  539 ttaaaaatgtttgactttaatcataactacttctaaa 575  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18580389 ttaaaaatgtatgactttaatcataactacttctaaa 18580353  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 18577552 - 18577504
Alignment:
Q  541 aaaaatgtttgactttaatcataactacttctaaagtcatacatatatgat 591  Q
    |||||||||||||||||| |||||||||||| ||||||  |||||||||||    
T  18577552 aaaaatgtttgactttaaacataactacttcgaaagtc--acatatatgat 18577504  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 36853163 - 36853112
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    |||| ||||||| ||||| | |||||||||||||||||||||||| ||||||    
T  36853163 atcaataaaaatatttgattataatcataactacttctaaagtcacacatat 36853112  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 575
Target Start/End: Complemental strand, 24547777 - 24547743
Alignment:
Q  541 aaaaatgtttgactttaatcataactacttctaaa 575  Q
    ||||||||||||||| |||||||||||||||||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaa 24547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 586
Target Start/End: Original strand, 46766088 - 46766129
Alignment:
Q  545 atgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  46766088 atgtttgactttaatcatacctgcttctaaagtcacacatat 46766129  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 575
Target Start/End: Complemental strand, 40612085 - 40611987
Alignment:
Q  477 ttcatataaactgtcggggtaaatattttttacactaacagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaa 575  Q
    |||||||| ||||| |  ||||||||||||||||||  |  |||||||||||||  | |||||  |||||||||||||| |||||||| ||||||||||    
T  40612085 ttcatatacactgttgttgtaaatattttttacactgtctatcaatcgtaatcaatagatcatacaaaatgtttgacttcaatcataaatacttctaaa 40611987  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 6468678 - 6468729
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacatat 586  Q
    ||||| |||| ||||||||||||||| ||| |||||||||||||||||||||    
T  6468678 atcataaaaactgtttgactttaatcttaattacttctaaagtcatacatat 6468729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 18966046 - 18966004
Alignment:
Q  532 catatcattaaaaatgtttgactttaatcataactacttctaa 574  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  18966046 catatcattaaaaatgtttgactttaatcgtaactaattctaa 18966004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 51125845 - 51125907
Alignment:
Q  501 attttttacactaacagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcata 563  Q
    ||||||||||||| || |||||| ||||| ||| ||||||| |||| ||||||||||||||||    
T  51125845 attttttacactaccaatcaatcataatcgccaaatcattagaaatatttgactttaatcata 51125907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 565
Target Start/End: Complemental strand, 17123267 - 17123220
Alignment:
Q  518 tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataac 565  Q
    |||||| |||||| | |||||||||||| |||||||||||||||||||    
T  17123267 tcaatcataatcatcctatcattaaaaaagtttgactttaatcataac 17123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 55713796 - 55713752
Alignment:
Q  535 atcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||    
T  55713796 atcattaaaaatgtttgatttcaatcataattacttttaaagtca 55713752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 575
Target Start/End: Complemental strand, 33295100 - 33295059
Alignment:
Q  534 tatcattaaaaatgtttgactttaatcataactacttctaaa 575  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  33295100 tatcattaaaaatgtttgacgttaatcataactacttataaa 33295059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 579
Target Start/End: Original strand, 5129644 - 5129708
Alignment:
Q  515 cagtcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtca 579  Q
    ||||||||||||| |  |||||||| |||||  |||||| |||||||||| ||||||||||||||    
T  5129644 cagtcaatcgtaaccgtcatatcataaaaaacatttgaccttaatcataaatacttctaaagtca 5129708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 44250708 - 44250656
Alignment:
Q  536 tcattaaaaatgtttgactttaatcataactacttctaaagtcatacatatat 588  Q
    ||||||||||||||||  |||||||||||||| ||||||||||| ||| ||||    
T  44250708 tcattaaaaatgtttgcttttaatcataactatttctaaagtcacacacatat 44250656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 533 - 587
Target Start/End: Complemental strand, 44325396 - 44325342
Alignment:
Q  533 atatcattaaaaatgtttgactttaatcataactacttctaaagtcatacatata 587  Q
    ||||||||||||||||  ||||||||||||| ||| ||||||||| | |||||||    
T  44325396 atatcattaaaaatgtaagactttaatcatatctatttctaaagttacacatata 44325342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 577
Target Start/End: Complemental strand, 35196142 - 35196106
Alignment:
Q  541 aaaaatgtttgactttaatcataactacttctaaagt 577  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  35196142 aaaaatgtttgacttcaatcataattacttctaaagt 35196106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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