View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_10 (Length: 326)
Name: NF21303_low_10
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 14743276 - 14742976
Alignment:
| Q |
12 |
catcatctcaacacggtgttgctcggttaacaaacaatgctgctcaggtaacatagtattgatgttatctcttgtatttacctttttagataatcatatg |
111 |
Q |
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| T |
14743276 |
catcatctcaacacggtgttgctcggttaacaaacaatgctgctcaggtaacatagtattgatgttatctcttgtatttacctttttagataatcatatg |
14743177 |
T |
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| Q |
112 |
atgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaacttaaggtg-ttct |
210 |
Q |
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| T |
14743176 |
atgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaacttaaggtgtttct |
14743077 |
T |
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| Q |
211 |
tatttcttgtactttgttctctattttgaattagtaattaatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaa |
310 |
Q |
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| T |
14743076 |
tatttcttgtactttgttctctattttgaattagtaattaatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaa |
14742977 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
14742976 |
a |
14742976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 14746168 - 14746082
Alignment:
| Q |
150 |
gagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaacttaaggtgttcttatttcttgtactttgttctctattt |
236 |
Q |
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| T |
14746168 |
gagaggtgcttttgtttctctaaatctaaatattcaagaattccaaaacttaaggtgttcttctttcttgtactttgttctctattt |
14746082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 14745969 - 14745907
Alignment:
| Q |
249 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaa |
311 |
Q |
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| T |
14745969 |
taatttgaaatttaatgcatatcttatgctaaatgatattgttttcacctgcagtgtcttaaa |
14745907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 14289443 - 14289503
Alignment:
| Q |
70 |
ttgatgttatctcttgtatttacctttttagataatcatatgatgttaattaataaatatt |
130 |
Q |
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| T |
14289443 |
ttgatgttatctcttgtattttcctttttagataatggtctgctgttgattaataaatatt |
14289503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 15052325 - 15052389
Alignment:
| Q |
249 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaatg |
313 |
Q |
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| T |
15052325 |
taatttgaaatttaacacatattgtgtgctaaattatactgtttccacctacagggtcttaaatg |
15052389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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