View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_12 (Length: 270)
Name: NF21303_low_12
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 33855282 - 33855045
Alignment:
| Q |
15 |
ctgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcatcaagtttgtgaaga |
114 |
Q |
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| T |
33855282 |
ctgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaaga |
33855183 |
T |
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| Q |
115 |
agcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctagatgaaattactaccctc |
214 |
Q |
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| T |
33855182 |
agcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctaaatgaaattattaccctc |
33855083 |
T |
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| Q |
215 |
ctctctgagaggttcttgattttcacaactacgggagg |
252 |
Q |
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| T |
33855082 |
ctctctgagaggttcttgattttcataactacgggagg |
33855045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 33865641 - 33865404
Alignment:
| Q |
15 |
ctgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcatcaagtttgtgaaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33865641 |
ctgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaaga |
33865542 |
T |
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| Q |
115 |
agcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctagatgaaattactaccctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33865541 |
agcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctagatgaaattattaccctc |
33865442 |
T |
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| Q |
215 |
ctctctgagaggttcttgattttcacaactacgggagg |
252 |
Q |
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| T |
33865441 |
ctctctgagaggttcttgattttcataactacaggagg |
33865404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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