View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_16 (Length: 227)
Name: NF21303_low_16
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 40376430 - 40376631
Alignment:
| Q |
18 |
agaaagtcatgtacttaaatatttttgatgagattttatt-gtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcctt |
116 |
Q |
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| T |
40376430 |
agaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcctt |
40376529 |
T |
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| Q |
117 |
gaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgat |
216 |
Q |
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|||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376530 |
gaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgat |
40376629 |
T |
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| Q |
217 |
gt |
218 |
Q |
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|| |
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| T |
40376630 |
gt |
40376631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 40333414 - 40333598
Alignment:
| Q |
35 |
aatatttttgatgagattttatt-gtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagattagata |
133 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40333414 |
aatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgacttcttgaatataagattagata |
40333513 |
T |
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| Q |
134 |
gaaacagtgaaactggaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgatgt |
218 |
Q |
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| T |
40333514 |
gaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatcgtccaatacttgtgatctttgatgatgt |
40333598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 40386692 - 40386876
Alignment:
| Q |
35 |
aatatttttgatgagattttatt-gtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagattagata |
133 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40386692 |
aatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgata |
40386791 |
T |
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| Q |
134 |
gaaacagtgaaactggaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgatgt |
218 |
Q |
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| T |
40386792 |
gaaacagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttgatgatgt |
40386876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 40277285 - 40277477
Alignment:
| Q |
18 |
agaaagtcatgtacttaaatatttttgatgagattttatt-gtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcctt |
116 |
Q |
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||||||||| ||| |||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277285 |
agaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcctt |
40277384 |
T |
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| Q |
117 |
gaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatgat |
216 |
Q |
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| T |
40277385 |
gaatattagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatacttgtgatctttgatgat |
40277475 |
T |
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