View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_low_17 (Length: 223)

Name: NF21303_low_17
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21303_low_17
NF21303_low_17
[»] chr3 (10 HSPs)
chr3 (18-104)||(8260558-8260644)
chr3 (42-104)||(8350014-8350076)
chr3 (45-104)||(8258478-8258537)
chr3 (45-104)||(8265551-8265610)
chr3 (169-206)||(8260709-8260746)
chr3 (30-100)||(8334002-8334073)
chr3 (169-206)||(8265675-8265712)
chr3 (63-104)||(8352761-8352802)
chr3 (49-104)||(8252867-8252922)
chr3 (169-206)||(8258602-8258639)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 8260558 - 8260644
Alignment:
Q  18 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260558 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  42 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  45 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  45 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 8260709 - 8260746
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaat 206  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaat 8260746  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  30 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 100  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 8265675 - 8265712
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaat 206  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaat 8265712  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  63 gataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  49 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 8258602 - 8258639
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaat 206  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaat 8258639  T

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