View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_low_18 (Length: 223)

Name: NF21303_low_18

Description: NF21303

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21303_low_18

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 184; E-Value: 1e-100

Query Start/End: Original strand, 16 - 207

Target Start/End: Complemental strand, 31053556 - 31053365

Alignment:

Q	16	gaacaatgttatcattgagctataaatgagactaagaagatagttgagtcattggtaccaaggatctaggcggagctcgccaagccatgttttcgtctac	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31053556	gaacaatgttatcattaagctataaatgagacaaagaagatagttgagtcattggtaccaaggatctaggcggagctcgccaagccatgttttcgtctac	31053457	T

Q	116	aggttgctgtaaaagatgaccaccaccccttcctctattggatccaattttgaaaatcttgccaaaccatttcataaaaccagacttcctct	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31053456	aggttgctgtaaaagatgaccaccaccccttcctctattggatccaattttgaaaatcttgccaaaccatttcataaaaccagacttcctct	31053365	T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 130 - 207

Target Start/End: Original strand, 34745468 - 34745545

Alignment:

Q	130	gatgaccaccaccccttcctctattggatccaattttgaaaatcttgccaaaccatttcataaaaccagacttcctct	207	Q
		\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\| \| \| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	34745468	gatgacgaccactccttcctctattggacccacctttgaaaagcttactgagccatttcatgaaaccagactttctct	34745545	T

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