View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_19 (Length: 205)
Name: NF21303_low_19
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 34875272 - 34875447
Alignment:
| Q |
18 |
aggtagaaaatataaagcaaaaagttacctgacataacaagctgaatctaagttgattatctttataatcagttccagttttaggaccatagagttttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34875272 |
aggtagaaaatataaagcaaaaagttacctgacataacaagctgaatctaagttgattatctttataatcagttccagttttaggaccatagagttttga |
34875371 |
T |
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| Q |
118 |
ctcggtcttcccccacacctttcatattccaaatgccaaaaataaagtcagtttaactc--taacacattcaaatt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34875372 |
ctcggtcttcccccacacctttcatattccaaatgccaaaaataaagtcagtttaactctataacacattcaaatt |
34875447 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 25077422 - 25077358
Alignment:
| Q |
110 |
agttttgactcggtcttcccccacacctttcatattccaaatgcc-aaaaataaagtcagtttaa |
173 |
Q |
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| T |
25077422 |
agttttgactaggccttcccccacacttgtcagattccaaaagccaaaaaataaagtcagtttaa |
25077358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 25135391 - 25135327
Alignment:
| Q |
110 |
agttttgactcggtcttcccccacacctttcatattccaaatgcc-aaaaataaagtcagtttaa |
173 |
Q |
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|||||||||| || |||||||||||| | ||| |||||||| ||| ||||||||||||||||||| |
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| T |
25135391 |
agttttgactaggccttcccccacacttgtcagattccaaaagccaaaaaataaagtcagtttaa |
25135327 |
T |
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