View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_2 (Length: 513)
Name: NF21303_low_2
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Original strand, 39469925 - 39470417
Alignment:
| Q |
7 |
ccaaattctgctggaatctcaccttcgaattcgttatatccaagaatcatatattccaatgatgaaagatttccaatctcaccaggaatttttccagtga |
106 |
Q |
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| T |
39469925 |
ccaaattctgctggaatctcaccttcgaattcgttatatccaagaatcatatattccaatgatgaaagatttccaagctcaccaggaatttttccagtga |
39470024 |
T |
|
| Q |
107 |
gattattccctgataaaccaagaaacttcaacttatgcaagttgctgaatgattttggaatcgaaccttcaaagaaactgcctctgagatcaagcatttc |
206 |
Q |
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| T |
39470025 |
gattattccctgataaaccaagaaacttcaacttatgcaagttgctgaatgattttggaatcgaaccttcaaagaaactgcctctgagatcaagcatttc |
39470124 |
T |
|
| Q |
207 |
taaggaaattgcatttccaatgtccaaaggaattgaacctgtgaactcattacttgatgcatttaatgttgtaagtcctgacgcctttccaagtcctaat |
306 |
Q |
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| T |
39470125 |
taaggaagttgcatttccaatgtccaaaggaattgaacctgtgaactcattacttgatgcatttaatgttgtaagtcccgacgcctttccaagtcctaat |
39470224 |
T |
|
| Q |
307 |
ggaaattcaccaatgaagaaattctgacttacatcaagacttttcaatgtggtgagattggatataaattttggaaatggtgatgaaaatgcattgcaac |
406 |
Q |
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| T |
39470225 |
ggaaattcaccaatgaagaaattctgacttacatcaagacttttcaatgtggtgagattggatataaattttggaaatggtgatgaaaatgcattgcaac |
39470324 |
T |
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| Q |
407 |
ataagttaagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttctgagagagatcaaggttctccacag |
499 |
Q |
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| T |
39470325 |
ataagttaagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttgtgagagagatcaaggttctccacag |
39470417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 347
Target Start/End: Complemental strand, 30088007 - 30087686
Alignment:
| Q |
26 |
caccttcgaattcgttatatccaagaatcatatattccaatgatgaaagatttccaatctcaccaggaatttttccagtgagattattccctgataaacc |
125 |
Q |
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||||||| ||||||||||| || | |||||||| |||| || ||||| || ||||||||| | || ||||| || |||||||||||||| |||| ||| |
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| T |
30088007 |
caccttcaaattcgttataaccgatgatcatatactccagcgacgaaagtttaccaatctcagccgggattttcccggtgagattattcccagatagacc |
30087908 |
T |
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| Q |
126 |
aagaaacttcaacttatgcaagttgctgaatgattttggaatcgaaccttcaaagaaactgcctctgagatcaagcatttctaaggaaattgcatttcca |
225 |
Q |
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| T |
30087907 |
gaggtacttcagattactcaaattactgatagattttggaatagacccttcaaagaagctgcctctaagatcaagtgtctctaaggaagagatatttcca |
30087808 |
T |
|
| Q |
226 |
atgtccaaaggaattgaacctgtgaactcattacttgatgcatttaatgttgtaagtcctgacgcctttccaagtcctaatggaaattcaccaatgaaga |
325 |
Q |
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| T |
30087807 |
aggtcctcaggaagaaaacctgagaaattgttgcttgatgcattcaaggtaagaagttccgatgcctttccaaggcctaatggaaagccgccggtgaaga |
30087708 |
T |
|
| Q |
326 |
aattctgacttacatcaagact |
347 |
Q |
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| T |
30087707 |
aattctggcttacatcgagact |
30087686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 493
Target Start/End: Original strand, 44262275 - 44262386
Alignment:
| Q |
382 |
aatggtgatgaaaatgcattgcaacataagttaagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttctgagaga |
481 |
Q |
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|||||||||||||| | |||||||| ||| ||||||| || ||| ||| |||| ||| ||||||| ||||| | ||||||||||||||| ||||||| |
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| T |
44262275 |
aatggtgatgaaaaagtgttgcaacagaagctaagagaggttagactttaaagtgtttctatatcattggatattgaaccactgagattcttgtgagaga |
44262374 |
T |
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| Q |
482 |
gatcaaggttct |
493 |
Q |
| |
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||||||| |||| |
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| T |
44262375 |
gatcaagcttct |
44262386 |
T |
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