View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_3 (Length: 455)
Name: NF21303_low_3
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 11672705 - 11672394
Alignment:
| Q |
4 |
atgtccaagaatatgtacggttacaagggattgggaattaataaggacaattagtaataagttctttttacggtggtgataattgaaattgaacnnnnnn |
103 |
Q |
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| T |
11672705 |
atgtgcaataatatgtacggttacaagggattgggaattaataaggactattagtaataagttctttttacggtggtgataattgaaattgaacaaaaaa |
11672606 |
T |
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| Q |
104 |
ntttaatagtcctagattttatttttgatcctcnnnnnnngaggggaaccctatgcatcctcttaaaactatgatatttctaaaattgacattaaagttg |
203 |
Q |
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| T |
11672605 |
atttaatagtcctagattttatttttgatcctctttttt-gaggggaaccctatgcatcctcttaaaactatgatatttctaaaattgacattaaagttg |
11672507 |
T |
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| Q |
204 |
attaattatttcgatttattcgtaaattgtacgtaatt---actataaatcaaatcaactcctccctgcatgtaactgctgtttgtaatatagtagtagt |
300 |
Q |
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| T |
11672506 |
attaattattttgatttattcgtaaattgtacgtaattactactataaatcaaatcaactcctccttgcatgtaactgctgtttgtaatatagtagtagt |
11672407 |
T |
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| Q |
301 |
tagaacgtagaaa |
313 |
Q |
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| T |
11672406 |
tagaacgtagaaa |
11672394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 11672352 - 11672279
Alignment:
| Q |
356 |
cttaatgcaaagtaaagaaaaaagctgctactttcctcaccttttaagtttctctggaaccttgttgtttttga |
429 |
Q |
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||||||||| |||||| ||||||| || ||||||||||||||| ||||||| ||| ||||| |||||||||||| |
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| T |
11672352 |
cttaatgcagagtaaaaaaaaaagttgttactttcctcaccttataagtttttctagaaccatgttgtttttga |
11672279 |
T |
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