View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21303_low_4 (Length: 445)
Name: NF21303_low_4
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21303_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 250 - 427
Target Start/End: Original strand, 10837278 - 10837455
Alignment:
| Q |
250 |
tacctacctaaaggcaacaagggaccaaataagaccaatgagacttgaataagtgtttggattacggataagcttcctccaaaccataatgagtatgaga |
349 |
Q |
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| T |
10837278 |
tacctacctaaaggcaacaagggaccaaataagaccaatgagacttgaataagtgtttggattacggataagcttcctccaaaccataatgagtatgaga |
10837377 |
T |
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| Q |
350 |
cgtgtcatgacgctcgccggaggcatgagttttccgacacttgaatccgcgactccagtggctttagggtggagctcc |
427 |
Q |
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| T |
10837378 |
cgtgtcatgacgctcgccggaggcatgagttttccgacacttgaatccgcgactccagtggctttagggtggagctcc |
10837455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 10837034 - 10837213
Alignment:
| Q |
11 |
cagagagtatggaaattgatttttctattattttaggcatatgaacatcccacctgcatgtaacaaaaccaacaataatagtcacataactaatttatga |
110 |
Q |
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| T |
10837034 |
cagacagtatggaaattgatttctctattattttaggcatatgaacatcccacctgcatgtaagaaaaccaacaataatagttacataactaatttatga |
10837133 |
T |
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| Q |
111 |
taa---taataataaaaaatatgaag-nnnnnnncagctattgcttatcatttagcaattattacaatccaaacttgttc |
186 |
Q |
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| T |
10837134 |
taataataataataaaaaatatgaagaaaaaaaacagctattgcttatcatttagcaattattacaatccaaacttgttc |
10837213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 33103579 - 33103452
Alignment:
| Q |
254 |
tacctaaaggcaacaagggaccaaataagaccaatgagacttgaataagtgtttggattacggataagcttcctccaaaccataatgagtatgagacgtg |
353 |
Q |
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| T |
33103579 |
tacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccatgatcagaatgagacggg |
33103480 |
T |
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| Q |
354 |
tcatgacgctcgccggaggcatgagttt |
381 |
Q |
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|||| || || |||||||||||| |||| |
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| T |
33103479 |
tcataacacttgccggaggcatgtgttt |
33103452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 33103793 - 33103739
Alignment:
| Q |
11 |
cagagagtatggaaattgatttttctattattttaggcatatgaacatcccacct |
65 |
Q |
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| T |
33103793 |
cagacagtatggagattgatttctctattattttaggcatatgcacatgccacct |
33103739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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