View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_low_5 (Length: 440)

Name: NF21303_low_5
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21303_low_5
NF21303_low_5
[»] chr4 (29 HSPs)
chr4 (6-423)||(49532170-49532589)
chr4 (52-191)||(48097954-48098094)
chr4 (115-219)||(53737821-53737930)
chr4 (333-423)||(49478561-49478651)
chr4 (123-224)||(23016257-23016363)
chr4 (51-191)||(19597112-19597254)
chr4 (49-221)||(2063444-2063619)
chr4 (121-222)||(8297838-8297944)
chr4 (49-155)||(9044273-9044377)
chr4 (136-221)||(30978696-30978786)
chr4 (55-223)||(51834880-51835054)
chr4 (114-191)||(2818361-2818438)
chr4 (94-146)||(7746135-7746186)
chr4 (121-177)||(42012081-42012137)
chr4 (121-221)||(45900182-45900287)
chr4 (121-180)||(52014584-52014644)
chr4 (121-216)||(31429258-31429350)
chr4 (253-300)||(49521181-49521228)
chr4 (360-423)||(49703168-49703231)
chr4 (52-109)||(1696152-1696210)
chr4 (80-218)||(41956423-41956565)
chr4 (121-159)||(42957004-42957042)
chr4 (115-161)||(44647908-44647954)
chr4 (114-186)||(12658252-12658325)
chr4 (121-181)||(24546741-24546802)
chr4 (115-220)||(50086435-50086544)
chr4 (49-89)||(16821237-16821277)
chr4 (130-181)||(39279204-39279256)
chr4 (161-222)||(52650764-52650829)
[»] chr8 (18 HSPs)
chr8 (51-225)||(31264961-31265140)
chr8 (52-225)||(25279893-25280069)
chr8 (114-191)||(25382624-25382703)
chr8 (115-219)||(37564359-37564468)
chr8 (82-221)||(39691109-39691252)
chr8 (85-186)||(29487057-29487159)
chr8 (122-222)||(20279589-20279694)
chr8 (122-222)||(21066216-21066321)
chr8 (125-181)||(11727937-11727993)
chr8 (121-222)||(28207591-28207697)
chr8 (94-147)||(42880881-42880933)
chr8 (123-222)||(12229960-12230059)
chr8 (124-187)||(1502706-1502771)
chr8 (122-187)||(15352105-15352170)
chr8 (121-186)||(41106031-41106097)
chr8 (121-219)||(42801049-42801151)
chr8 (132-218)||(1876526-1876617)
chr8 (140-191)||(6073232-6073284)
[»] chr7 (15 HSPs)
chr7 (51-191)||(34681694-34681836)
chr7 (77-221)||(36973304-36973454)
chr7 (121-221)||(27123242-27123347)
chr7 (121-222)||(17302858-17302964)
chr7 (51-221)||(28770445-28770621)
chr7 (54-221)||(3683392-3683560)
chr7 (58-216)||(33922709-33922872)
chr7 (52-133)||(34593333-34593413)
chr7 (114-189)||(35567118-35567194)
chr7 (121-187)||(22688984-22689051)
chr7 (130-191)||(33887894-33887956)
chr7 (46-147)||(47754465-47754566)
chr7 (52-89)||(282927-282964)
chr7 (161-222)||(34299817-34299882)
chr7 (121-176)||(37352444-37352500)
[»] chr5 (13 HSPs)
chr5 (51-224)||(25437836-25438016)
chr5 (49-191)||(24040985-24041127)
chr5 (114-191)||(16161421-16161499)
chr5 (123-191)||(967104-967173)
chr5 (121-223)||(7719170-7719277)
chr5 (94-220)||(30501146-30501277)
chr5 (94-220)||(30541489-30541620)
chr5 (121-222)||(41583510-41583616)
chr5 (123-186)||(33590061-33590125)
chr5 (113-191)||(26663637-26663716)
chr5 (113-191)||(26935232-26935311)
chr5 (130-221)||(31672379-31672476)
chr5 (161-222)||(29342303-29342368)
[»] chr2 (11 HSPs)
chr2 (77-221)||(13538363-13538512)
chr2 (100-191)||(44195509-44195600)
chr2 (73-191)||(14663165-14663284)
chr2 (51-224)||(18684325-18684505)
chr2 (115-223)||(32859751-32859864)
chr2 (121-191)||(9153507-9153578)
chr2 (53-181)||(41543989-41544119)
chr2 (121-191)||(8964394-8964465)
chr2 (100-144)||(36480544-36480587)
chr2 (121-224)||(3882581-3882689)
chr2 (114-220)||(20683023-20683134)
[»] chr1 (19 HSPs)
chr1 (51-222)||(2864110-2864285)
chr1 (56-181)||(44442262-44442386)
chr1 (60-191)||(5423719-5423850)
chr1 (135-225)||(34861259-34861354)
chr1 (140-222)||(39912262-39912349)
chr1 (121-220)||(4540782-4540881)
chr1 (133-191)||(1048715-1048773)
chr1 (121-191)||(5417710-5417780)
chr1 (130-191)||(6983032-6983094)
chr1 (115-221)||(34445637-34445748)
chr1 (123-221)||(39150550-39150653)
chr1 (123-191)||(1600951-1601020)
chr1 (125-220)||(18114470-18114571)
chr1 (161-223)||(31807854-31807920)
chr1 (121-222)||(39156228-39156334)
chr1 (53-109)||(45640631-45640688)
chr1 (130-222)||(3047834-3047931)
chr1 (113-153)||(5787467-5787507)
chr1 (49-89)||(34046461-34046500)
[»] chr3 (8 HSPs)
chr3 (51-222)||(54290741-54290916)
chr3 (53-155)||(46547746-46547847)
chr3 (106-186)||(31581393-31581473)
chr3 (121-191)||(53040471-53040542)
chr3 (97-170)||(43803992-43804065)
chr3 (161-223)||(29611986-29612052)
chr3 (125-175)||(30299298-30299349)
chr3 (115-155)||(53364586-53364626)
[»] scaffold0011 (1 HSPs)
scaffold0011 (114-191)||(219192-219270)
[»] chr6 (7 HSPs)
chr6 (56-159)||(22695451-22695553)
chr6 (79-187)||(25028690-25028798)
chr6 (121-220)||(34185059-34185163)
chr6 (191-222)||(35229259-35229290)
chr6 (77-190)||(7421675-7421789)
chr6 (121-190)||(12132530-12132600)
chr6 (53-144)||(31702705-31702796)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 49532170 - 49532589
Alignment:
Q  6 agtgagaagaaaatcaatcatattagttttaatcatcttaatgttaagggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaac 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  49532170 agtgataagaaaatcaatcatattagttttaatcatcttaatgttaagggaaatgttaacgaatgtcccgagacactctttaagggccttaaatagtaac 49532269  T
Q  106 ttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttataaagaataatttcttaatttggaatgctta----gtgtcccggg 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  49532270 ttttaataaaaa-catgtgtatttaatgcattggaaattgaattatttgattttataaagaataatttcttaatttggaatgcttacagagtgtcccggg 49532368  T
Q  202 ggcactcgttaacaagaccctaatgttaatacctatacgattgggtttataagaaaatcatattaattttaatcatggtattgttaatgcctatactatt 301  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49532369 ggcactcgttaacaagaccctaatgttaatacctatactattgggtttataagaaaatcatattaattttaatcatggtattgttaatgcctatactatt 49532468  T
Q  302 gggttttgtacatcaattcagtgttgtttgtactcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtc 401  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49532469 gggttttgtacatc-attcagtgttgtttgtactcactgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtc 49532567  T
Q  402 atgaggcggcttttgagtacac 423  Q
    ||||||||||||||||||||||    
T  49532568 atgaggcggcttttgagtacac 49532589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 48098094 - 48097954
Alignment:
Q  52 agggaaatgttaacgaatgcc-ccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatta 150  Q
    |||||||||||||||| ||   ||| ||||||  |||||| | |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||    
T  48098094 agggaaatgttaacgattgtttccgggacacttgttaaggttcttaaatagtaactttttataaaaa-catgtgtatttaatgtattggaaattgaacta 48097996  T
Q  151 tttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||| | |||| ||||||||||||||||||||| |||| ||||    
T  48097995 tttaacttttttaaagaataatttcttaatttagaatactta 48097954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 53737821 - 53737930
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttg-attttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcg 209  Q
    ||||| |||||||| |||||||||||||| ||| |||||| ||||| ||||||||||||||||| ||||||| ||||    |||| || |||||||||||    
T  53737821 aaaacgtgtgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccctgggggcactcg 53737920  T
Q  210 ttaacaagac 219  Q
    ||| ||||||    
T  53737921 ttagcaagac 53737930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 49478561 - 49478651
Alignment:
Q  333 actcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacac 423  Q
    ||||||||| || |||||||| ||||  || | |||||| ||||| ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  49478561 actcaccgttgacacgatgtactcttcgaacgcttccttgtacttgtcatacaatggctgagaatagtcattaggaggcttttgagtacac 49478651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 23016257 - 23016363
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttgattt-tataaagaataatttcttaatttggaatgct----tagtgtcccgggggcactcgttaacaag 217  Q
    |||||| |||||||||||||||||| | ||||| || | |||| ||||||||||||||||||||||||     |||| ||||||||| ||||||| ||||    
T  23016257 tgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaatgctcaaagagtgccccgggggcgctcgttagcaag 23016356  T
Q  218 accctaa 224  Q
    |||||||    
T  23016357 accctaa 23016363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 19597112 - 19597254
Alignment:
Q  51 aagggaaatgttaacgaatgcc-ccgaga-cactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaat 148  Q
    ||||||||||||||| | |||| ||| || |||||||||||||| ||||||| |||| ||| || |||||  | |||||| |||||||| |||||||||     
T  19597112 aagggaaatgttaacaagtgcctccgggaacactctttaagggtcttaaataataacattttat-aaaaatttatgtattcaatgcattagaaattgaac 19597210  T
Q  149 tatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||||  ||| |||||||||||||| |||| | |||||||||    
T  19597211 tatttgacatttttaaagaataatttcctaatgtagaatgctta 19597254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 2063619 - 2063444
Alignment:
Q  49 ttaagggaaatgttaacgaatgccccgaga-cactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaa 147  Q
    |||||||||||||||| || || ||| ||| ||||||||||| |  |  ||||||||||||| || ||||   |||||||||||| ||||||||||||||    
T  2063619 ttaagggaaatgttaaagagtgtccc-agagcactctttaagagcctagaatagtaactttttatgaaaatt-tgtgtatttaatacattggaaattgaa 2063522  T
Q  148 ttatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccc 221  Q
     | ||||| |||| |||||||||| ||| |||||| | ||||||    ||||| ||||| |||||||||||||||||||    
T  2063521 ctgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgt-ccgggagcactcgttaacaagaccc 2063444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 8297944 - 8297838
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaac 214  Q
    |||||||| |||||||||||||||| |  | ||||  ||||| ||||||||||| || ||||||| |||||||    ||| |||||||||||||||||||    
T  8297944 tgtgtattgaatgcattggaaattgtaacagttgacatttta-aaagaataattactaaatttgggatgcttaaagagtgccccgggggcactcgttaac 8297846  T
Q  215 aagaccct 222  Q
    ||||||||    
T  8297845 aagaccct 8297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 9044377 - 9044273
Alignment:
Q  49 ttaagggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaat 148  Q
    ||||||||||||||||||| ||| |||| ||||| ||||||||| | |  | |||||||||  |||||||| |||||||| ||||| ||| ||||||||     
T  9044377 ttaagggaaatgttaacgagtgctccgaaacact-tttaagggtctcaggttgtaactttt-ttaaaaaacttgtgtattcaatgctttgcaaattgaac 9044280  T
Q  149 tatttga 155  Q
    |||||||    
T  9044279 tatttga 9044273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 30978696 - 30978786
Alignment:
Q  136 ttggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccc 221  Q
    |||||||||||| ||||||| |||| |||  ||| |||||||||||||||||||||    |||| ||| ||||||||| ||||||||||||    
T  30978696 ttggaaattgaactatttgacttttttaataaatcatttcttaatttggaatgcttaaagagtgccccaggggcactccttaacaagaccc 30978786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 51835054 - 51834880
Alignment:
Q  55 gaaatgttaacgaatgc-cccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattattt 153  Q
    ||||||||||||| ||  |||||||||||||||||     ||||||||||| |||| |   ||||  ||||||||||||||||||||||||  | || ||    
T  51835054 gaaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagtt 51834955  T
Q  154 ga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagacccta 223  Q
    || ||||  ||||||||||| || ||||| | ||||||    ||||||||||||  |||| ||||||||||||||    
T  51834954 gactttttaaaagaataattgctaaatttaggatgcttaaagagtgtcccggggaaactcattaacaagacccta 51834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 2818438 - 2818361
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||||||| ||| ||||||||||||||||||| | |||||  ||||| ||||||||||||||||||||  ||||||||    
T  2818438 aaaaacatgt-tatctaatgcattggaaattgaactttttgacctttta-aaagaataatttcttaatttaaaatgctta 2818361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 7746135 - 7746186
Alignment:
Q  94 ttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattga 146  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||    
T  7746135 ttaaatagtaacttttaat-aaaaatatgtgtatttagtgcattgaaaattga 7746186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 42012137 - 42012081
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaagaataatttctta 177  Q
    |||||||||||||||||| ||| |||| ||||||| ||| |||| ||||||||||||    
T  42012137 tgtgtatttaatgcattgtaaaatgaagtatttgactttttaaaaaataatttctta 42012081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 45900182 - 45900287
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||||| ||||||||||||||||   || |||| |||||||| |||||||| || ||||| | |||||||    ||| | ||||||||||||||||||    
T  45900182 tgtgtattgaatgcattggaaattgtgatagttgactttataaaagaataattgctaaatttaggatgcttaaagagtgcctcgggggcactcgttaaca 45900281  T
Q  216 agaccc 221  Q
    ||||||    
T  45900282 agaccc 45900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 52014644 - 52014584
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatt 180  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||| |||||||||| |||||    
T  52014644 tgtgtatctaatgcattggaaattggattatttgacttttttaatgaataatttcctaatt 52014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 31429350 - 31429258
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttat-aaagaataatttcttaatttggaatgcttagtgtcccgggggcactcgttaacaa 216  Q
    |||||||| |||||||||||||||| | || |||||||| | |||||||||||| | ||| ||||||||||    |  |||||||||||||||||||    
T  31429350 tgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataatttttaaatatggaatgctt----tttcgggggcactcgttaacaa 31429258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 49521181 - 49521228
Alignment:
Q  253 agaaaatcatattaattttaatcatggtattgttaatgcctatactat 300  Q
    |||||||||||||| ||||||||||| ||||||||||  |||||||||    
T  49521181 agaaaatcatattagttttaatcatgttattgttaataactatactat 49521228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 49703168 - 49703231
Alignment:
Q  360 aaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacac 423  Q
    |||||||||||| ||||||||||||| | | |  ||||| |||||||| |||||||||||||||    
T  49703168 aaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcttttgagtacac 49703231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 1696152 - 1696210
Alignment:
Q  52 agggaaatgttaacgaatg-ccccgagacactctttaagggtgttaaatagtaactttt 109  Q
    |||||||||||||| | || |||||||||||||||||||  | ||||||||||||||||    
T  1696152 agggaaatgttaaccagtgtccccgagacactctttaagacttttaaatagtaactttt 1696210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 41956423 - 41956565
Alignment:
Q  80 actctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttat-aaagaataatttcttaa 178  Q
    ||||||||||||  || |||||||| |||| || |||||  |||||| | ||||| ||| |||||||| ||||| | ||| | |||||||| |||||||     
T  41956423 actctttaagggcttttaatagtaaatttttatgaaaaat-tgtgtaatcaatgcgttgaaaattgaaatatttaaatttcttaaagaatactttcttat 41956521  T
Q  179 tttggaatgctta----gtgtcccgggggcactcgttaacaaga 218  Q
    |||||| ||||||    |||||| ||||||||||||||| ||||    
T  41956522 tttggattgcttaaagagtgtcctgggggcactcgttaataaga 41956565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 42957004 - 42957042
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgatttt 159  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  42957004 tgtgtaattaatgcattggaaattgaaatatttgatttt 42957042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 44647908 - 44647954
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttgattttat 161  Q
    |||| ||||||| ||||||||| |||||||||| |||||||||||||    
T  44647908 aaaatatgtgtaattaatgcatcggaaattgaaatatttgattttat 44647954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 12658325 - 12658252
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattattt-gattttataaagaataatttcttaatttggaat 186  Q
    ||||||||||||||||||||||||  |||||| | |||||  ||||| ||||||||| ||| ||||||| ||||    
T  12658325 aaaaacatgtgtatttaatgcattaaaaattgtaatatttaaattttttaaagaatagttttttaatttagaat 12658252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 24546741 - 24546802
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttg-attttataaagaataatttcttaattt 181  Q
    |||||||||||| |||||||||||||| |  ||| ||||| |||||||||||||| ||||||    
T  24546741 tgtgtatttaatacattggaaattgaactgcttgaattttttaaagaataatttcctaattt 24546802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 50086435 - 50086544
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcg 209  Q
    |||| ||||||||| ||||||||| ||||  || ||||||| |||| ||||||||||||  ||| ||||||||| ||    ||| |||| ||||||||||    
T  50086435 aaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttccc-ggggcactcg 50086533  T
Q  210 ttaacaagacc 220  Q
    |||||||||||    
T  50086534 ttaacaagacc 50086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 16821237 - 16821277
Alignment:
Q  49 ttaagggaaatgttaacgaatgccccgagacactctttaag 89  Q
    ||||| ||||||||||||| | |||||||||||||||||||    
T  16821237 ttaagagaaatgttaacgagtaccccgagacactctttaag 16821277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 39279256 - 39279204
Alignment:
Q  130 aatgcattggaaattgaattatttga-ttttataaagaataatttcttaattt 181  Q
    ||||||||||||||||||  |||||| |||| ||| |||||||||||||||||    
T  39279256 aatgcattggaaattgaagaatttgacttttttaaggaataatttcttaattt 39279204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 52650764 - 52650829
Alignment:
Q  161 taaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccct 222  Q
    ||||||||||||||||||||| | ||| ||    ||||| |||| |||||||||||||||||||||    
T  52650764 taaagaataatttcttaatttagcatgtttaaagagtgttccggaggcactcgttaacaagaccct 52650829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 31265140 - 31264961
Alignment:
Q  51 aagggaaatgttaacgaatgc-cccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatt 149  Q
    ||||||||||||||||| ||| |||| | ||||||||||| |  | |||||||||||||| || |||| | |||||||||||| ||||||||||||||||    
T  31265140 aagggaaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaa-cttgtgtatttaatacattggaaattgaatt 31265042  T
Q  150 atttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccctaat 225  Q
     ||||| |||| |||||||||| ||| |||||| | ||||||    |||| | | ||||||||||||||||||||||||||    
T  31265041 gtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgccacaggggcactcgttaacaagaccctaat 31264961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 25280069 - 25279893
Alignment:
Q  52 agggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattat 151  Q
    |||||||||||||||| ||||||  | ||||||||||| |  | ||||||||| |||| || |||| | | |||||||||| ||||||||||||||||||    
T  25280069 agggaaatgttaacgagtgcccctgggcactctttaagagcctaaaatagtaaatttttatgaaaa-cttatgtatttaatacattggaaattgaattat 25279971  T
Q  152 ttgattttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccctaat 225  Q
    |||| ||| |||||||||| ||| |||||| | ||||||    ||||||   |||||||||||||||||||| |||||    
T  25279970 ttgactttttaaagaataacttcctaatttagcatgcttaaagagtgtcgtaggggcactcgttaacaagactctaat 25279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 25382703 - 25382624
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||| |||||||||||||||||||||||| | ||||| |  |||| |||||||||||||||||||||||||||||||    
T  25382703 aaaaacaagtgtatttaatgcattggaaattggactattttactttttttaaagaataatttcttaatttggaatgctta 25382624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 37564359 - 37564468
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcg 209  Q
    ||||| |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| | ||| ||    |||||||| | ||||||||    
T  37564359 aaaacttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcg 37564458  T
Q  210 ttaacaagac 219  Q
    ||||||||||    
T  37564459 ttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 39691109 - 39691252
Alignment:
Q  82 tctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatt 180  Q
    ||||||||| | ||||||||||| |||| || ||||   |||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||| |||||     
T  39691109 tctttaaggatcttaaatagtaattttttatgaaaatt-tgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatg 39691207  T
Q  181 tggaatgctt----agtgtcccgggggcactcgttaacaagaccc 221  Q
    ||||||||||    |||||| || |||||||||||||||| ||||    
T  39691208 tggaatgcttaaagagtgtctcgagggcactcgttaacaaaaccc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 29487057 - 29487159
Alignment:
Q  85 ttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttg 182  Q
    |||||||| |||| ||||||||||| |||||||  ||||||||| ||||||||| |||||||| ||||| |  |||| |||||||||||||||||||||     
T  29487057 ttaagggttttaagtagtaactttttataaaaat-atgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaattta 29487155  T
Q  183 gaat 186  Q
    ||||    
T  29487156 gaat 29487159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 20279589 - 20279694
Alignment:
Q  122 gtgtatttaatgcattggaaattgaattatttgattttat-aaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaa 216  Q
    |||||||||||| |||| |||||||| ||||||| ||| | ||||||||||| |||| ||| |||||||||    ||| |||||||||||| ||||||||    
T  20279589 gtgtatttaatgtattgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccccgggggcacttgttaacaa 20279688  T
Q  217 gaccct 222  Q
    ||||||    
T  20279689 gaccct 20279694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 21066216 - 21066321
Alignment:
Q  122 gtgtatttaatgcattggaaattgaattatttgattttat-aaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaa 216  Q
    |||||||||||| |||| |||||||| ||||||| ||| | ||||||||||| |||| ||| |||||||||    ||| |||||||||||| ||||||||    
T  21066216 gtgtatttaatgtattgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccccgggggcacttgttaacaa 21066315  T
Q  217 gaccct 222  Q
    ||||||    
T  21066316 gaccct 21066321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 11727937 - 11727993
Alignment:
Q  125 tatttaatgcattggaaattgaattatttgattttataaagaataatttcttaattt 181  Q
    ||||||||| |||| |||||||| ||||||| ||| |||||||||||||||||||||    
T  11727937 tatttaatgtattgaaaattgaagtatttgactttttaaagaataatttcttaattt 11727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 28207697 - 28207591
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||||| |||||||||||||||| | || |||| ||| |||| |||| |||  | ||||||| |||||||    ||||| ||||||||||||||||||    
T  28207697 tgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgttaaatttgggatgcttaaagagtgtctcgggggcactcgttaaca 28207598  T
Q  216 agaccct 222  Q
    |||||||    
T  28207597 agaccct 28207591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 42880933 - 42880881
Alignment:
Q  94 ttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaa 147  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  42880933 ttaaatagtaattttttataaaaa-catgtgtatttaatgcatcggaaattgaa 42880881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 12230059 - 12229960
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttgattttataaagaataatttcttaatttggaatgcttagtgtcccgggggcactcgttaacaagaccct 222  Q
    |||||| || || |||||||||||| ||||| | ||| |||||||||||||||| |||| ||||||  ||||  |   || |||||||||||||||||||    
T  12230059 tgtattcaaggccttggaaattgaactatttcactttttaaagaataatttcttgatttagaatgcagagtgctcaaaggacactcgttaacaagaccct 12229960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 1502706 - 1502771
Alignment:
Q  124 gtatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatg 187  Q
    ||||||||||||||| |||||||| | |||||  |||| |||||||||||||| |||||| |||||    
T  1502706 gtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatg 1502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 15352105 - 15352170
Alignment:
Q  122 gtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatg 187  Q
    |||||||||||| ||||||||||||| ||||||| |||| || |||||||||| ||||||| |||||    
T  15352105 gtgtatttaatg-attggaaattgaactatttgacttttttacagaataattttttaatttagaatg 15352170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 41106031 - 41106097
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaat 186  Q
    |||| ||| ||||||||| |||||||| ||||||| |||| ||| || |||||||||||||||||||    
T  41106031 tgtgaattcaatgcattgaaaattgaactatttgacttttttaatgattaatttcttaatttggaat 41106097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 42801151 - 42801049
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttg-attttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaaca 215  Q
    |||||| ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| ||| |||| |||    |||||| | ||||||||||||||||    
T  42801151 tgtgtaattaatgcattgaaaattgaaatatttgccttttgtaaagaataattacttattttagaatacttaaaaagtgtcac-ggggcactcgttaaca 42801053  T
Q  216 agac 219  Q
    ||||    
T  42801052 agac 42801049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 1876526 - 1876617
Alignment:
Q  132 tgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaaga 218  Q
    ||||||||||||||||   |||||  ||||| ||||||||||| |||||||| | |||||||    ||| |||||||||||||||||||||||    
T  1876526 tgcattggaaattgaaaattttgacatttta-aaagaataattacttaatttagcatgcttaaagagtgccccgggggcactcgttaacaaga 1876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 6073284 - 6073232
Alignment:
Q  140 aaattgaattatttgattttat-aaagaataatttcttaatttggaatgctta 191  Q
    |||||||||||||||||||| | |||||||| ||| |||||| ||||||||||    
T  6073284 aaattgaattatttgattttgtaaaagaatatttttttaattaggaatgctta 6073232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 34681836 - 34681694
Alignment:
Q  51 aagggaaatgttaacgaatgcccc-gagacactctttaa-gggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaat 148  Q
    ||||||||||||||||| |||||| | | ||||  |||| |||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||     
T  34681836 aagggaaatgttaacgagtgcccccggggcactggttaacgggtcttaaatagtaactttttataaaaa-cttgtgtatttaatgcattggaaattgaac 34681738  T
Q  149 tatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||| |||| |||| ||||||||| |||||| |||||||||    
T  34681737 tatttgacttttgtaaaaaataatttcctaatttagaatgctta 34681694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 36973454 - 36973304
Alignment:
Q  77 gacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttat--aaagaataatttc 174  Q
    |||||||||||||||| ||||||||||| ||||     ||||  ||| |||||| |||||||||||||||||||||||||||| |  ||||||||| |||    
T  36973454 gacactctttaagggttttaaatagtaatttttttatgaaaatttgtatatttattgcattggaaattgaattatttgattttttttaaagaataacttc 36973355  T
Q  175 ttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccc 221  Q
     ||||||||||||||||    |||  |||| ||||||||||||||||||||    
T  36973354 ctaatttggaatgcttaaagagtgcaccggaggcactcgttaacaagaccc 36973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 27123347 - 27123242
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||| |||||||||||||||||| | || |||| ||| |||| |||| ||| || ||||||| |||||||    ||| ||||||||||||||||||||    
T  27123347 tgtgtacttaatgcattggaaattgtaatagttgactttttaaaagaatgattactaaatttgggatgcttaaagagtgccccgggggcactcgttaaca 27123248  T
Q  216 agaccc 221  Q
    ||||||    
T  27123247 agaccc 27123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 17302964 - 17302858
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaa--ttatttgattttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaac 214  Q
    |||| ||||| ||||||||||||||||  ||| ||  ||||| ||| ||||||||||| ||| ||||||||||    |||| ||||||||||||||||||    
T  17302964 tgtgcatttattgcattggaaattgaagtttactttttttta-aaataataatttctttattaggaatgcttaaagagtgtaccgggggcactcgttaac 17302866  T
Q  215 aagaccct 222  Q
    ||||||||    
T  17302865 aagaccct 17302858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 28770621 - 28770445
Alignment:
Q  51 aagggaaatgttaacgaatgcc-ccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatt 149  Q
    ||||||||||||||||| |||| |||  ||||||||||||     |||||||||| |||| |   ||||  |||||||| |||||||||||||||| | |    
T  28770621 aagggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 28770522  T
Q  150 atttga-ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccc 221  Q
    | |||| ||||  ||||||||||| || | ||||| |||||||    ||| ||||| ||||||||||||||||||||    
T  28770521 agttgacttttcaaaagaataattactaattttgggatgcttaaagagtgccccggaggcactcgttaacaagaccc 28770445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 3683560 - 3683392
Alignment:
Q  54 ggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattattt 153  Q
    |||||||||||| | ||||||||  |||| ||||||| | |||||||||||||||| || ||||   | |||||| ||||||| |||||||||| |||||    
T  3683560 ggaaatgttaactagtgccccgatgcactttttaagg-tcttaaatagtaactttttatgaaaagt-tatgtattcaatgcat-ggaaattgaactattt 3683464  T
Q  154 gattttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccc 221  Q
    ||  || | ||||||| |||| ||||||   ||||||    ||||| |||||||||||||||||||| ||||    
T  3683463 gaaattttcaagaatattttcctaatttattatgcttaaagagtgtgccgggggcactcgttaacaaaaccc 3683392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 33922709 - 33922872
Alignment:
Q  58 atgttaacgaatgccccgagacactctttaagggtgttaaatagtaac-ttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga- 155  Q
    |||||||||| |||||   ||||||||||||   | |||||||||| | ||||  || ||||| | ||| || ||||||||| |||||||| |||||||     
T  33922709 atgttaacgagtgcccgatgacactctttaacaatcttaaatagtagcctttttttataaaacttatgtgttcaatgcattgaaaattgaactatttgac 33922808  T
Q  156 ttttataaagaataatttcttaatttggaatgctt---agtgtcccgggggcactcgttaacaa 216  Q
    |||| |||||||||||||  |||||| ||||||||   | || |||| ||||||||||||||||    
T  33922809 ttttttaaagaataattttctaatttagaatgcttaaaaatgccccgtgggcactcgttaacaa 33922872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 34593333 - 34593413
Alignment:
Q  52 agggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatg 133  Q
    |||||||||||||||| |   | |||| |||||||||| || ||||| |||||||||| |||||| ||||||||||||||||    
T  34593333 agggaaatgttaacgagttttcagagatactctttaagcgtcttaaagagtaactttttataaaa-acatgtgtatttaatg 34593413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 35567194 - 35567118
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgct 189  Q
    ||||| |||||||||||||| |||||||||| || ||||||| |||| |||| ||||||||  ||||||| ||||||    
T  35567194 aaaaatatgtgtatttaatgtattggaaattaaaatatttgacttttttaaaaaataattttctaatttgaaatgct 35567118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 22688984 - 22689051
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatg 187  Q
    |||||||||||||||||  ||||||||||  |||| |||| |||||||||| |||||||||| |||||    
T  22688984 tgtgtatttaatgcattaaaaattgaattgattgacttttttaaagaataaattcttaatttagaatg 22689051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 33887894 - 33887956
Alignment:
Q  130 aatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||||| |||||||| ||||||| |||| ||||||||||||  ||| |||||||||||||    
T  33887894 aatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgctta 33887956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 47754465 - 47754566
Alignment:
Q  46 atgttaagggaaatgttaacgaatgcccc-gagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaatt 144  Q
    |||||||||||||||||||||| |||||| | | |||||||||||    ||||||||||| |||| || | ||  || |||||||||||||||||||| |    
T  47754465 atgttaagggaaatgttaacgagtgcccctggggcactctttaagacctttaaatagtaaatttttatgagaattat-tgtatttaatgcattggaaaat 47754563  T
Q  145 gaa 147  Q
    |||    
T  47754564 gaa 47754566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 282927 - 282964
Alignment:
Q  52 agggaaatgttaacgaatgccccgagacactctttaag 89  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  282927 agggaaatgttaacgagtgccccgggacactctttaag 282964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 34299817 - 34299882
Alignment:
Q  161 taaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccct 222  Q
    |||||||||||| |||||| | | |||||||    ||| |||||||||||||||||||||||||||    
T  34299817 taaagaataattgcttaatctagcatgcttaaaaagtgccccgggggcactcgttaacaagaccct 34299882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 37352444 - 37352500
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataa-agaataatttctt 176  Q
    |||||| |||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  37352444 tgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttctt 37352500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 25437836 - 25438016
Alignment:
Q  51 aagggaaatgttaacgaatgccccgag--acactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaat 148  Q
    ||||||||||||||||| ||||||  |  |||||||||||| |  |  ||||||||||||| || |||| | |||||||||||| ||||||||||||||     
T  25437836 aagggaaatgttaacgagtgccccccggcacactctttaagagcctagaatagtaactttttatgaaaa-cttgtgtatttaatacattggaaattgaac 25437934  T
Q  149 tatttga--ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccctaa 224  Q
    | ||| |  |||| |||||||||| |||||||||| | |||||||    |||||||||||||||||||||||||||||||||    
T  25437935 tgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgtcccgggggcactcgttaacaagaccctaa 25438016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 24040985 - 24041127
Alignment:
Q  49 ttaagggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaat 148  Q
    ||||||||||||||||||| || |     ||||| ||||||||| |||||||||||||||| ||  ||||  | ||||||||||| |||||||||| ||     
T  24040985 ttaagggaaatgttaacgagtgtctttgaacactttttaagggtcttaaatagtaactttttat-gaaaagttatgtatttaatgtattggaaattaaac 24041083  T
Q  149 tatttg-attttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| ||||| |||||||||||||| |||||||  |||||||    
T  24041084 tatttgaattttttaaagaataatttcataatttgatatgctta 24041127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 16161499 - 16161421
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||| ||||||||||||| ||||| |||||||||||||| | |||| | || ||||||||| ||||||||||||||||    
T  16161499 aaaaatatgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgctta 16161421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 967173 - 967104
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttg-attttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| |||||||||||||||||| |||||| ||||| ||||||||||| || |||||||| |||||||    
T  967173 tgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaatttggtatgctta 967104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 7719277 - 7719170
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||||| |||  ||||||||||| | || |||||||| |||| ||||||||| | ||| ||| |||||||    |||||||||||||||||||||| |    
T  7719277 tgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatttttaaatatggtatgcttaaagagtgtcccgggggcactcgttaaaa 7719178  T
Q  216 agacccta 223  Q
    ||||||||    
T  7719177 agacccta 7719170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 30501146 - 30501277
Alignment:
Q  94 ttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta- 191  Q
    ||||||||||| ||||||   ||||  |||||||| |||| ||||||||||| | || |||| ||| |||| |||||||| || ||||||| |||||||     
T  30501146 ttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30501245  T
Q  192 ---gtgtcccgggggcactcgttaacaagacc 220  Q
       ||| || ||||||||||||||||||||||    
T  30501246 agagtgccctgggggcactcgttaacaagacc 30501277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 30541489 - 30541620
Alignment:
Q  94 ttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttcttaatttggaatgctta- 191  Q
    ||||||||||| ||||||   ||||  |||||||| |||| ||||||||||| | || |||| ||| |||| |||||||| || ||||||| |||||||     
T  30541489 ttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30541588  T
Q  192 ---gtgtcccgggggcactcgttaacaagacc 220  Q
       ||| || ||||||||||||||||||||||    
T  30541589 agagtgccctgggggcactcgttaacaagacc 30541620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 41583616 - 41583510
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaag-aataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||||| |||||||||||| ||| | ||||| | ||| | ||| |||||||||| ||||||| || ||||    ||| ||||||||||||||||||||    
T  41583616 tgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaatttgggatccttaaagagtgacccgggggcactcgttaaca 41583517  T
Q  216 agaccct 222  Q
    |||||||    
T  41583516 agaccct 41583510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 33590125 - 33590061
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttgattttat-aaagaataatttcttaatttggaat 186  Q
    ||||||||||| ||||||||||||| ||||| ||||| | |||||||||||| ||||||| ||||    
T  33590125 tgtatttaatgtattggaaattgaactatttaattttttaaaagaataatttattaatttagaat 33590061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 26663716 - 26663637
Alignment:
Q  113 aaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| ||||||| | ||| |||||||||| ||| ||||||| |||| |||| |||||||||||| ||| |||||||||    
T  26663716 aaaaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgctta 26663637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 26935311 - 26935232
Alignment:
Q  113 aaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| ||||||| | ||| |||||||||| ||| ||||||| |||| |||| |||||||||||| ||| |||||||||    
T  26935311 aaaaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgctta 26935232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 31672476 - 31672379
Alignment:
Q  130 aatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccc 221  Q
    ||||||||||||||||||  ||||||  |||| ||  ||||| |||||   |||||||||||||    ||| ||||||||||||||||||||||||||    
T  31672476 aatgcattggaaattgaaacatttgactttttttatggaatagtttctccttttggaatgcttaaagagtgccccgggggcactcgttaacaagaccc 31672379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 29342368 - 29342303
Alignment:
Q  161 taaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccct 222  Q
    |||||||||||||||   |||||||||||||    |||| || |||||||||||||||||||||||    
T  29342368 taaagaataatttctccttttggaatgcttaaagagtgttcccggggcactcgttaacaagaccct 29342303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 13538512 - 13538363
Alignment:
Q  77 gacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttg-attttataaagaataatttct 175  Q
    |||||||||||||||| |||||||||||||||| || ||||   | |||||| ||||||||||||||||||||||||| ||||| |||||||||||||      
T  13538512 gacactctttaagggtcttaaatagtaactttttatgaaaagt-tatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttc 13538414  T
Q  176 taatttggaatgctt----agtgtcc-cgggggcactcgttaacaagaccc 221  Q
    |||||| | ||||||    |||| || ||||||||||||||||||||||||    
T  13538413 taatttagtatgcttaaagagtgccctcgggggcactcgttaacaagaccc 13538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 44195600 - 44195509
Alignment:
Q  100 agtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| | |||| |||||||||||||||||||||  ||||||||    
T  44195600 agtaactttttataaaaa-catgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgctta 44195509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 14663165 - 14663284
Alignment:
Q  73 ccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataat 171  Q
    ||||| |||||||||||||| ||||||| ||| |||| | ||||||  |||| |||||||| ||||||||||||| ||||||| || | |||||||||||    
T  14663165 ccgaggcactctttaagggtcttaaataataattttttaaaaaaaatttgtgcatttaatgtattggaaattgaactatttgacttatttaaagaataat 14663264  T
Q  172 ttcttaatttggaatgctta 191  Q
    || |||||||  ||||||||    
T  14663265 tttttaatttaaaatgctta 14663284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 18684505 - 18684325
Alignment:
Q  51 aagggaaatgttaacgaatgc-cccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatt 149  Q
    ||||||||||||||||| ||| |||  ||||||||||||| |  |  |||| |||||||| || ||||   |||||||||||| ||||||||||||||||    
T  18684505 aagggaaatgttaacgagtgctccctggacactctttaagagcctagaataataactttttatgaaaatt-tgtgtatttaatacattggaaattgaatt 18684407  T
Q  150 atttga-ttttataaagaataatttcttaatttggaatgctt------agtgtcccgggggcactcgttaacaagaccctaa 224  Q
     | ||| |||| |||||||||| ||| |||||| | ||||||      ||||||||| | ||||||||||||||||||||||    
T  18684406 gtatgacttttttaaagaataacttcctaatttagcatgctttaaaagagtgtcccgagagcactcgttaacaagaccctaa 18684325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 32859864 - 32859751
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcg 209  Q
    ||||| |||||||||||| |||||||||||||| | ||||| |||| |||||||||| ||| |||||| | ||| ||    |||| || |||||||||||    
T  32859864 aaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtgccctgggggcactcg 32859765  T
Q  210 ttaacaagacccta 223  Q
    ||||||||||||||    
T  32859764 ttaacaagacccta 32859751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 9153507 - 9153578
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||||| |||||||||||||||||| | ||||  |||| |||||||||||||||||||||||||| ||||    
T  9153507 tgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatcctta 9153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 41544119 - 41543989
Alignment:
Q  53 gggaaatgttaacga--atgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatta 150  Q
    |||||||||||||||  || ||| ||| |||||||||||||| ||||||| ||| |||| || |||||  | |||||| | |||||||||||||||| ||    
T  41544119 gggaaatgttaacgagtatccccggag-cactctttaagggtcttaaataataattttttatgaaaaat-tatgtattcattgcattggaaattgaacta 41544022  T
Q  151 tttga--ttttataaagaataatttcttaattt 181  Q
    |||||  |||| |||||||||||||| ||||||    
T  41544021 tttgaatttttttaaagaataatttcctaattt 41543989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 8964465 - 8964394
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| | |||||||||||||||||| ||||| | |||| |||||||||||| |||||||| |||||||||    
T  8964465 tgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgctta 8964394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 36480587 - 36480544
Alignment:
Q  100 agtaacttttaataaaaaacatgtgtatttaatgcattggaaatt 144  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  36480587 agtaactttttataaaaa-catgtgtatttaatgcattggaaatt 36480544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 3882689 - 3882581
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgat-tttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaaca 215  Q
    |||||| | ||||||||| |||  ||| |||||||  ||| |||||||||||| |||| ||| |||||||||    ||| |||| |||||||||||||||    
T  3882689 tgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggcactcgttaaca 3882590  T
Q  216 agaccctaa 224  Q
    |||||||||    
T  3882589 agaccctaa 3882581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 20683023 - 20683134
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttgattttataa-agaataatttcttaatttggaatgctta----gtgtcccgggggcactc 208  Q
    ||||| ||||||| | ||||||| |||||| ||| ||||||||||| | | | |||  ||||||  |||||||| ||||    |||||||||||||||||    
T  20683023 aaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttcttttggaatccttaaagagtgtcccgggggcactc 20683122  T
Q  209 gttaacaagacc 220  Q
    ||||||||||||    
T  20683123 gttaacaagacc 20683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 2864285 - 2864110
Alignment:
Q  51 aagggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatta 150  Q
    ||||||||||||||||| |||||||   |||||||||||    ||||||||||| |||| |   ||||  |||||||| |||||||||||||||| | ||    
T  2864285 aagggaaatgttaacgagtgccccggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaata 2864186  T
Q  151 tttgattttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccct 222  Q
     |||| ||| |||||||||||| || ||| ||| ||| |||    ||||||||||| |||||||||||||||||||    
T  2864185 gttgactttttaaagaataattcctaaatatgggatgtttaaagagtgtcccggggacactcgttaacaagaccct 2864110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 44442386 - 44442262
Alignment:
Q  56 aaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga 155  Q
    |||||||||| | || |||| ||||||  |||| ||| |||||||||||||||| |||||||  |||||||||||||| |||| |||||||| |||||||    
T  44442386 aaatgttaacaagtgtcccg-gacacttgttaatggtcttaaatagtaactttttataaaaat-atgtgtatttaatgtattgaaaattgaaatatttga 44442289  T
Q  156 -ttttataaagaataatttcttaattt 181  Q
     |||| |||||||||||||| ||||||    
T  44442288 cttttttaaagaataatttcctaattt 44442262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 5423719 - 5423850
Alignment:
Q  60 gttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttt 158  Q
    |||||||| |||| ||||||||||||||| ||| |||||| |||| |||| ||  ||||| | |||||||||||||||| |||||||| ||||| | |||    
T  5423719 gttaacgagtgcctcgagacactctttaaaggtcttaaatggtaattttttat-gaaaacttatgtatttaatgcattgaaaattgaactatttaacttt 5423817  T
Q  159 tataaagaataatttcttaatttggaatgctta 191  Q
    | |||||||||||||  ||||||  ||||||||    
T  5423818 tttaaagaataattttctaatttaaaatgctta 5423850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 34861259 - 34861354
Alignment:
Q  135 attggaaattgaattatttgat-tttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccctaat 225  Q
    ||||||||||||| | |||||  ||| |||| ||||||| |||||||| |||||||||    ||| ||| ||||||||||||||||||||||||||    
T  34861259 attggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgcccccggggcactcgttaacaagaccctaat 34861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 39912262 - 39912349
Alignment:
Q  140 aaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccct 222  Q
    |||||||||| ||||| |||| |||| ||||| ||| |||||| | |||||||    |||||||||||||||||||||||||||||||    
T  39912262 aaattgaattgtttgacttttttaaataataacttcctaatttagcatgcttaaagagtgtcccgggggcactcgttaacaagaccct 39912349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 4540782 - 4540881
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgcttagtgtcccgggggcactcgttaacaagac 219  Q
    |||||||| |||| ||||||||| | | || |||| ||||| ||| |||| ||| |||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  4540782 tgtgtattcaatgtattggaaatggtagtacttgacttttaaaaaaaatagtttattaatttgaaatccttagtgtccc-ggggcactcgttagcaagac 4540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 1048715 - 1048773
Alignment:
Q  133 gcattggaaattgaattatttgattttataaagaataatttcttaatttggaatgctta 191  Q
    |||||| |||||||| ||||| | ||| ||||||||||||| ||||||||| |||||||    
T  1048715 gcattgaaaattgaactatttaactttttaaagaataattttttaatttggtatgctta 1048773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 5417780 - 5417710
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgattttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||||||||| |||| |||||| | ||||| ||||| | | ||||||||||||||||| |||| ||||    
T  5417780 tgtgtatttaatgtattgaaaattgtaatattttattttttgatgaataatttcttaatttagaatcctta 5417710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 6983032 - 6983094
Alignment:
Q  130 aatgcattggaaattgaattatttgatt-ttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||||| |||||||| ||||||| | || ||| |||||||||||||||||||||| ||||    
T  6983032 aatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatactta 6983094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 34445748 - 34445637
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcg 209  Q
    ||||||||| || | |||||||||||||| ||| ||||||| |||| || | | |||||||||  |||||||| ||||    |||  |||||||||||||    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  210 ttaacaagaccc 221  Q
    ||||||||||||    
T  34445648 ttaacaagaccc 34445637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 39150653 - 39150550
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttgattttata-aagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaag 217  Q
    |||||| ||||||||| |||||| | || |||| ||| || |||||||||| || ||||| | |||||||    ||| ||||||||||||||||||||||    
T  39150653 tgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaatttaggatgcttaaagagtgccccgggggcactcgttaacaag 39150554  T
Q  218 accc 221  Q
    ||||    
T  39150553 accc 39150550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 1601020 - 1600951
Alignment:
Q  123 tgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||||||||||||| ||||||||| ||||| |  ||| |||||||||||||  |||||| |||||||||    
T  1601020 tgtatttaatgcatttgaaattgaactatttaacatttttaaagaataattttgtaatttagaatgctta 1600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 18114470 - 18114571
Alignment:
Q  125 tatttaatgcattggaaattgaattatttga--ttttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaaga 218  Q
    |||||||||||||||||||||||  | ||||  |||| |   | |||||||||||| ||||||||||||    ||| |||| ||||||||||||||||||    
T  18114470 tatttaatgcattggaaattgaaacaattgactttttttgttggataatttcttaaattggaatgcttaaagagtgccccgcgggcactcgttaacaaga 18114569  T
Q  219 cc 220  Q
    ||    
T  18114570 cc 18114571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 31807854 - 31807920
Alignment:
Q  161 taaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagacccta 223  Q
    |||||||||||| |||| ||| |||||||||    |||  |||||||||||||||||||||||||||    
T  31807854 taaagaataattacttattttagaatgcttaaatagtgctccgggggcactcgttaacaagacccta 31807920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 39156334 - 39156228
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaaca 215  Q
    |||||||| |||||||||||||||| | || |||| ||||  ||||||||||| || |||||   ||||||    |||||| | ||||||||||||||||    
T  39156334 tgtgtattgaatgcattggaaattgtagtagttgactttttaaaagaataattactaaatttttgatgcttaaagagtgtctcaggggcactcgttaaca 39156235  T
Q  216 agaccct 222  Q
    |||||||    
T  39156234 agaccct 39156228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 45640688 - 45640631
Alignment:
Q  53 gggaaatgttaacgaatg-ccccgagacactctttaagggtgttaaatagtaactttt 109  Q
    ||||||||||||||| || |||||||||||||||||||  | ||||||||||| ||||    
T  45640688 gggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttt 45640631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 3047931 - 3047834
Alignment:
Q  130 aatgcattggaaattgaattatttgat-tttataaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagaccct 222  Q
    |||||||||||||| |||  ||||||  ||| ||||||| |||| |||||||| | |||||||    ||| ||||||||||||| |||||||||||||    
T  3047931 aatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtgccccgggggcactctttaacaagaccct 3047834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 5787467 - 5787507
Alignment:
Q  113 aaaaaacatgtgtatttaatgcattggaaattgaattattt 153  Q
    |||||| ||||||| |||||||||||||||||||| |||||    
T  5787467 aaaaaatatgtgtaattaatgcattggaaattgaaatattt 5787507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 34046500 - 34046461
Alignment:
Q  49 ttaagggaaatgttaacgaatgccccgagacactctttaag 89  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  34046500 ttaagggaaatgttaacgagtgccccg-gacactctttaag 34046461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 54290741 - 54290916
Alignment:
Q  51 aagggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaatta 150  Q
    ||||||||||||||||| |||||||||  |||||||||| |  | ||||| || ||||| ||  ||||| |||||||||||| |||||||||||||| |     
T  54290741 aagggaaatgttaacgagtgccccgaggtactctttaagagcctaaaataatatctttttat-gaaaacttgtgtatttaatacattggaaattgaactg 54290839  T
Q  151 tttga-ttttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaacaagaccct 222  Q
    ||||| |||| |||||||||| ||| ||||||   ||||||    |||| |||||||  ||||||||||||||||||    
T  54290840 tttgacttttttaaagaataacttcctaatttatcatgcttaaagagtgccccggggatactcgttaacaagaccct 54290916  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 46547746 - 46547847
Alignment:
Q  53 gggaaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatt 152  Q
    ||||||||||||||| ||  ||  |||||||||||||||| ||| ||||||| |||| || |||||  | |||||| |||||||||||||||||||||||    
T  46547746 gggaaatgttaacgagtgttcccggacactctttaagggtcttatatagtaattttttatgaaaaat-tatgtattcaatgcattggaaattgaattatt 46547844  T
Q  153 tga 155  Q
    |||    
T  46547845 tga 46547847  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 31581393 - 31581473
Alignment:
Q  106 ttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttataaagaataatttcttaatttggaat 186  Q
    ||||||| ||||| ||||||||||||||| ||| ||||| ||||||||   ||| |||||||| |||||||||||| ||||    
T  31581393 ttttaatcaaaaatatgtgtatttaatgctttgaaaattaaattatttacctttttaaagaatcatttcttaatttagaat 31581473  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 53040542 - 53040471
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttg-attttataaagaataatttcttaatttggaatgctta 191  Q
    |||||||| ||| |||||||||||||| |||||| ||||| |||| |||||||||||||||| |||| ||||    
T  53040542 tgtgtattcaatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcctta 53040471  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 43804065 - 43803992
Alignment:
Q  97 aatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataa 170  Q
    ||||||||||||| || |||| | |||||||||||| |||||||||||||||| ||||| |||| ||||||||||    
T  43804065 aatagtaactttttatgaaaa-cttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 29612052 - 29611986
Alignment:
Q  161 taaagaataatttcttaatttggaatgctta----gtgtcccgggggcactcgttaacaagacccta 223  Q
    |||||||||||| |||| ||| ||||| |||    ||||||||||||||||||||||||||||||||    
T  29612052 taaagaataattacttattttagaatgtttaaagagtgtcccgggggcactcgttaacaagacccta 29611986  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 30299349 - 30299298
Alignment:
Q  125 tatttaatgcattggaaattgaattatttga-ttttataaagaataatttct 175  Q
    |||||||||||||| ||||||||||| |||| |||| |||||||||||||||    
T  30299349 tatttaatgcattgaaaattgaattacttgacttttttaaagaataatttct 30299298  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 53364586 - 53364626
Alignment:
Q  115 aaaacatgtgtatttaatgcattggaaattgaattatttga 155  Q
    |||| ||||||||||| |||||| |||||||||||||||||    
T  53364586 aaaatatgtgtatttagtgcatttgaaattgaattatttga 53364626  T

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Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 219270 - 219192
Alignment:
Q  114 aaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctta 191  Q
    ||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||  ||||||||    
T  219270 aaaaatatatgtatttaatgcattggaaattgaactatttgacttttgtaaagaataatttcctaatttaaaatgctta 219192  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 22695451 - 22695553
Alignment:
Q  56 aaatgttaacgaatgccccgagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga 155  Q
    |||||||||| | ||||||| ||||||| |||||| | |||||| ||||||||| || ||||| ||||||| | ||||||| | |||||||| |||||||    
T  22695451 aaatgttaaccagtgccccg-gacactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T
Q  156 tttt 159  Q
    ||||    
T  22695550 tttt 22695553  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 25028690 - 25028798
Alignment:
Q  79 cactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttctta 177  Q
    ||||||||||| || ||||||  |||||||| || |||||| |||||||| ||||||||| |||||||| | ||||| |||| |||||||||||||  ||    
T  25028690 cactctttaagagtcttaaattttaactttttat-aaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttcta 25028788  T
Q  178 atttggaatg 187  Q
    |||| |||||    
T  25028789 attttgaatg 25028798  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 34185059 - 34185163
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttgatt-ttataaagaataatttcttaatttggaatgctt----agtgtcccgggggcactcgttaaca 215  Q
    |||| ||||| |||||||||||||||| | ||| ||  || |||||||||||||||| ||| |||||||||    |||| ||||| |||||| |||||||    
T  34185059 tgtgcatttattgcattggaaattgaagtctttaatcattttaaagaataatttctttattaggaatgcttaaagagtgccccggaggcacttgttaaca 34185158  T
Q  216 agacc 220  Q
    |||||    
T  34185159 agacc 34185163  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 35229290 - 35229259
Alignment:
Q  191 agtgtcccgggggcactcgttaacaagaccct 222  Q
    ||||||||||||||||||||||||||||||||    
T  35229290 agtgtcccgggggcactcgttaacaagaccct 35229259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 7421789 - 7421675
Alignment:
Q  77 gacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaattgaattatttgattttataaa-gaataatttct 175  Q
    |||||||||||||    |||||||||||  ||| || |||||  |||||||| ||||||||| |||||| | ||||||| ||| ||||  ||||||| ||    
T  7421789 gacactctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaatatttgactttttaaataaataattact 7421690  T
Q  176 taatttggaatgctt 190  Q
     ||||||||||||||    
T  7421689 aaatttggaatgctt 7421675  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 12132600 - 12132530
Alignment:
Q  121 tgtgtatttaatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgctt 190  Q
    |||||||| ||||||||| ||||||||||||||||  ||| ||||||||| |||| |||| | ||||||||    
T  12132600 tgtgtattaaatgcattgaaaattgaattatttgacgtttttaaagaatattttcataatatagaatgctt 12132530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 31702705 - 31702796
Alignment:
Q  53 gggaaatgttaacgaatgcccc-gagacactctttaagggtgttaaatagtaacttttaataaaaaacatgtgtatttaatgcattggaaatt 144  Q
    ||||||||||||||||||  || | |||||||||||||    |||||||||||||||| || ||||| ||||||| | |||||||| ||||||    
T  31702705 gggaaatgttaacgaatgttcctgggacactctttaagatccttaaatagtaactttttat-aaaaatatgtgtaatcaatgcattagaaatt 31702796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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