View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21303_low_7 (Length: 414)

Name: NF21303_low_7
Description: NF21303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21303_low_7
NF21303_low_7
[»] scaffold0088 (2 HSPs)
scaffold0088 (155-391)||(40011-40250)
scaffold0088 (1-130)||(40294-40424)
[»] chr3 (8 HSPs)
chr3 (162-391)||(8875469-8875698)
chr3 (47-132)||(16925567-16925651)
chr3 (49-122)||(8875758-8875831)
chr3 (322-391)||(13911026-13911095)
chr3 (321-389)||(22928889-22928957)
chr3 (334-391)||(14305171-14305229)
chr3 (335-391)||(13410236-13410293)
chr3 (155-271)||(16925693-16925810)
[»] chr6 (17 HSPs)
chr6 (162-391)||(12418530-12418760)
chr6 (162-391)||(12420886-12421116)
chr6 (47-132)||(12418396-12418481)
chr6 (47-132)||(12421165-12421250)
chr6 (322-391)||(11988828-11988898)
chr6 (172-386)||(23590422-23590636)
chr6 (47-122)||(23010412-23010487)
chr6 (47-129)||(11306684-11306766)
chr6 (47-132)||(20229027-20229112)
chr6 (47-132)||(22123011-22123096)
chr6 (323-391)||(25946237-25946305)
chr6 (322-394)||(11306398-11306471)
chr6 (315-385)||(18560153-18560223)
chr6 (47-132)||(23590691-23590775)
chr6 (322-389)||(7390766-7390833)
chr6 (322-391)||(25915784-25915853)
chr6 (323-392)||(31136972-31137041)
[»] chr1 (11 HSPs)
chr1 (166-394)||(21290645-21290873)
chr1 (47-131)||(33128889-33128973)
chr1 (47-121)||(18780673-18780747)
chr1 (328-391)||(4601313-4601377)
chr1 (322-387)||(20886955-20887021)
chr1 (328-391)||(33128608-33128672)
chr1 (47-122)||(10158751-10158826)
chr1 (47-121)||(21290936-21291010)
chr1 (322-392)||(25402118-25402188)
chr1 (322-389)||(22531239-22531306)
chr1 (47-121)||(25401828-25401902)
[»] chr7 (17 HSPs)
chr7 (47-132)||(17132643-17132728)
chr7 (47-132)||(15125238-15125323)
chr7 (47-132)||(17140251-17140336)
chr7 (322-391)||(14961562-14961632)
chr7 (322-391)||(15391034-15391104)
chr7 (335-392)||(18098047-18098105)
chr7 (47-131)||(7404425-7404509)
chr7 (323-392)||(12331352-12331421)
chr7 (183-238)||(21668659-21668716)
chr7 (335-391)||(9560107-9560164)
chr7 (322-387)||(15125434-15125501)
chr7 (348-391)||(10309669-10309712)
chr7 (322-387)||(17132925-17132991)
chr7 (325-387)||(17140536-17140598)
chr7 (322-391)||(17880741-17880810)
chr7 (335-391)||(11064568-11064625)
chr7 (328-391)||(7404156-7404220)
[»] scaffold0501 (2 HSPs)
scaffold0501 (162-394)||(8827-9058)
scaffold0501 (47-121)||(8694-8768)
[»] chr8 (15 HSPs)
chr8 (47-131)||(24477726-24477810)
chr8 (323-392)||(920808-920877)
chr8 (323-391)||(9007321-9007389)
chr8 (328-387)||(22264397-22264457)
chr8 (326-391)||(15926868-15926933)
chr8 (76-130)||(22738369-22738423)
chr8 (324-392)||(23818553-23818621)
chr8 (329-385)||(24477452-24477509)
chr8 (47-122)||(921091-921166)
chr8 (322-391)||(21284753-21284822)
chr8 (48-84)||(22739056-22739092)
chr8 (321-391)||(24092874-24092944)
chr8 (47-104)||(9007028-9007085)
chr8 (315-387)||(21302393-21302465)
chr8 (323-382)||(22602479-22602538)
[»] chr2 (10 HSPs)
chr2 (47-131)||(11323816-11323900)
chr2 (325-391)||(19279658-19279725)
chr2 (328-394)||(11324105-11324172)
chr2 (326-392)||(25568190-25568257)
chr2 (334-391)||(27189689-27189747)
chr2 (322-391)||(27597433-27597502)
chr2 (334-391)||(27839503-27839561)
chr2 (47-132)||(20478214-20478299)
chr2 (334-392)||(23781070-23781129)
chr2 (350-391)||(25577105-25577146)
[»] scaffold0502 (2 HSPs)
scaffold0502 (329-391)||(11909-11972)
scaffold0502 (47-132)||(12187-12272)
[»] chr5 (8 HSPs)
chr5 (322-391)||(17987870-17987940)
chr5 (51-122)||(16075669-16075740)
chr5 (322-392)||(24923687-24923757)
chr5 (47-122)||(17987580-17987655)
chr5 (47-132)||(23779036-23779121)
chr5 (47-132)||(23865989-23866074)
chr5 (315-392)||(22969098-22969174)
chr5 (322-391)||(22703255-22703323)
[»] scaffold0004 (2 HSPs)
scaffold0004 (328-391)||(357496-357560)
scaffold0004 (335-391)||(378687-378744)
[»] chr4 (2 HSPs)
chr4 (315-391)||(10070951-10071027)
chr4 (322-386)||(14632400-14632464)
[»] scaffold0056 (2 HSPs)
scaffold0056 (328-391)||(54126-54190)
scaffold0056 (47-131)||(54406-54490)
[»] scaffold0001 (1 HSPs)
scaffold0001 (328-391)||(61901-61965)
[»] scaffold0009 (2 HSPs)
scaffold0009 (322-391)||(223039-223108)
scaffold0009 (47-122)||(269668-269743)
[»] scaffold0005 (1 HSPs)
scaffold0005 (322-386)||(184828-184892)
[»] scaffold0059 (1 HSPs)
scaffold0059 (315-391)||(29660-29736)
[»] scaffold0338 (2 HSPs)
scaffold0338 (47-122)||(17334-17409)
scaffold0338 (323-392)||(17623-17692)
[»] scaffold0099 (1 HSPs)
scaffold0099 (359-392)||(36816-36849)
[»] scaffold0054 (1 HSPs)
scaffold0054 (162-214)||(76864-76916)


Alignment Details
Target: scaffold0088 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 155 - 391
Target Start/End: Complemental strand, 40250 - 40011
Alignment:
Q  155 aacttcttgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttgg-ttgactttgacgtgaattttctttttg 253  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||  ||||||||||||||||||    
T  40250 aacttcctgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcgtgctttcccccctttttgcttgacttcaacgtgaattttctttttg 40151  T
Q  254 agccttactttgtcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgc-aagtt 352  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  40150 agctttactttgtcgaaaatctagtttttcgctctaggcttgatattccgtcgagatttcctaaatgaaaatgagaaagctcttcgattcctgcaaagtt 40051  T
Q  353 aaagttcaaataaatg-ttgaccatattaaatgagcctgt 391  Q
    |||| ||||| ||||| |||||||||||||||||||||||    
T  40050 aaaggtcaaacaaatgtttgaccatattaaatgagcctgt 40011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 40424 - 40294
Alignment:
Q  1 gagatgaacgggtttgaagtaaaaggcactgtc-ctcgacaggtttgagtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttg 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40424 gagaagaacgggtttgaagtaaaaggcactgtctctcgacaggtttgagtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttg 40325  T
Q  100 aaaactactatttatagtaaaaatctagatg 130  Q
     ||| ||||||||||| ||||||||||||||    
T  40324 gaaaatactatttatactaaaaatctagatg 40294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 162 - 391
Target Start/End: Complemental strand, 8875698 - 8875469
Alignment:
Q  162 tgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttggttgactttgacgtgaattttctttttgagccttac 261  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||   | || || ||| | |||| |    
T  8875698 tgtcccacgtctccactacatggaaaccgtttcaatgcttgaaatcgtgctttcccgccttttgattgacttcgacgcataattgctctttcaaccttgc 8875599  T
Q  262 tttgtcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgc-aagttaaagttca 360  Q
    ||||||||| |||| | | | ||||| ||||||||||||||||| || |||| | |||  |||| |||||| |||||||||||||| || |||||| |||    
T  8875598 tttgtcgaagatctggctatgcgctccaggcttgatattccgtcgag-tttctccaattgaaataagaaagttcttcgattcctgcaaaattaaaggtca 8875500  T
Q  361 aataaatgttgaccatattaaatgagcctgt 391  Q
    || ||||||||||||||||||||||||||||    
T  8875499 aacaaatgttgaccatattaaatgagcctgt 8875469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 16925567 - 16925651
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||| | ||||||||||||| ||||| ||||| |||||| ||||||||||||||| |||||| |||||||||    
T  16925567 agtttgagtgttgtagaaatctgtatatgatttgcgaccctctttccggcttggaaactactatttatactaaaaa-ctagatggc 16925651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 8875831 - 8875758
Alignment:
Q  49 tttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||| | |||| ||||||||||||| || | |||||| |||||||||||||||||||||| ||||||    
T  8875831 tttgagtgttgtaaaattctgtatatgatttgcgatctactttccggcttgaaaactactatttatactaaaaa 8875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 13911026 - 13911095
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| |||| |||||||||| ||||||| ||||  |||||||||| |||||||||||||||||    
T  13911026 aaatgagaaagc-cttcaattcctgcaaagttaaaggtcaaccaaatgttgactatattaaatgagcctgt 13911095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 22928889 - 22928957
Alignment:
Q  321 aaaatgagaaagctcttcgattcctgc-aagttaaagttcaaataaatgttgaccatattaaatgagcct 389  Q
    |||||||||||| |||||||||||||| ||||||||  |||| ||||||||||| | |||||||||||||    
T  22928889 aaaatgagaaag-tcttcgattcctgctaagttaaaagtcaactaaatgttgacaacattaaatgagcct 22928957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 14305229 - 14305171
Alignment:
Q  334 tcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||| ||||||| ||||| |||| | |||||||||||||||||||||    
T  14305229 tcttcgattcctacaaagttaaaggtcaaacaaatatcgaccatattaaatgagcctgt 14305171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 13410236 - 13410293
Alignment:
Q  335 cttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||| ||||||| ||  | || |||||||||||||||||||||||||    
T  13410236 cttcgattcctgcaaagttaaaggtcggacaagtgttgaccatattaaatgagcctgt 13410293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 16925693 - 16925810
Alignment:
Q  155 aacttcttgtcccacgtct-ccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttggttgactttgacgtgaattttctttttg 253  Q
    |||| |||||||||||| | ||||||   ||||||||  ||| ||||||||||| ||||||||||||||||| ||| ||| ||   ||| || || |||     
T  16925693 aactacttgtcccacgttttccactaaaaggaaaccgcctcattgcttgaaatcgtgctttcccgccttttgcttgtcttcgatacgaaattgctctttc 16925792  T
Q  254 agccttactttgtcgaaa 271  Q
    |||||||||| |||||||    
T  16925793 agccttacttcgtcgaaa 16925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 391
Target Start/End: Original strand, 12418530 - 12418760
Alignment:
Q  162 tgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgcc-ttttggttgactttgacgtgaattttctttttgagcctta 260  Q
    ||||||| |||| |||||||| |||||||||| |||| |||||||| || ||||| ||| ||||| ||||||| |||| | | || ||  ||||||||      
T  12418530 tgtcccatgtcttcactaccttgaaaccgttttaatgattgaaatcgtgttttcctgcccttttgattgacttcgacgcgtaattactccttgagcctcg 12418629  T
Q  261 ctttgtcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgcaa-gttaaagttc 359  Q
    || |||||||||||| ||| | || || ||||||||||||| ||| || ||  |||||||||||| |||||||| |||||||||||||| ||||||| ||    
T  12418630 ctctgtcgaaaatcttgttatgcggtccaggcttgatattctgtcgagtttctccaaatgaaaat-agaaagcttttcgattcctgcaaagttaaaggtc 12418728  T
Q  360 aaataaatgttgaccatattaaatgagcctgt 391  Q
    ||| ||||||||||||||||||||||||||||    
T  12418729 aaacaaatgttgaccatattaaatgagcctgt 12418760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 391
Target Start/End: Complemental strand, 12421116 - 12420886
Alignment:
Q  162 tgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgcc-ttttggttgactttgacgtgaattttctttttgagcctta 260  Q
    ||||||| |||| |||||||| |||||||||| |||| |||||||| || ||||| ||| ||||| ||||||| |||| | | || ||  ||||||||      
T  12421116 tgtcccatgtcttcactaccttgaaaccgttttaatgattgaaatcgtgttttcctgcccttttgattgacttcgacgcgtaattactccttgagcctcg 12421017  T
Q  261 ctttgtcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgcaa-gttaaagttc 359  Q
    || |||||||||||| ||| | || || ||||||||||||| ||| || ||  |||||||||||| |||||||| |||||||||||||| ||||||| ||    
T  12421016 ctctgtcgaaaatcttgttatgcggtccaggcttgatattctgtcgagtttctccaaatgaaaat-agaaagcttttcgattcctgcaaagttaaaggtc 12420918  T
Q  360 aaataaatgttgaccatattaaatgagcctgt 391  Q
    ||| ||||||||||||||||||||||||||||    
T  12420917 aaacaaatgttgaccatattaaatgagcctgt 12420886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 12418396 - 12418481
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  12418396 agtttgagtgttgtagaattctgtatatgatttgcgacccactttccggcttggaaactactatttatactaaaaacctagatggc 12418481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 12421250 - 12421165
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  12421250 agtttgagtgttgtagaattctgtatatgatttgcgacccactttccggcttggaaactactatttatactaaaaacctagatggc 12421165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 11988828 - 11988898
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  11988828 aaatgagaaagctctttgattcctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 11988898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 386
Target Start/End: Complemental strand, 23590636 - 23590422
Alignment:
Q  172 ctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttggttgactttgacgtgaattttctttttgagccttactttgtcgaaa 271  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||| |||| ||  || || ||| |||||| ||| |||||||    
T  23590636 ctccactacatagaaaccgtttcaatgcttgaaatcgtgctttcccgccttttgtttaacttcgacgcgagattgctctttcagccttgcttcgtcgaaa 23590537  T
Q  272 atctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgc-aagttaaagttcaaataaatgtt 370  Q
     |||   | | ||| |||||||| || ||  ||| ||| |||   ||| ||||||||||| ||||||||||||||| || | |||| ||||| |||| |     
T  23590536 ttctgactatgcgccctaggcttaatgttttgtcgaga-ttcttcaattaaaatgagaaaactcttcgattcctgcaaaataaaaggtcaaacaaatatc 23590438  T
Q  371 gaccatattaaatgag 386  Q
     |||||||||||||||    
T  23590437 aaccatattaaatgag 23590422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 23010487 - 23010412
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||||| |||||| | ||||||||||||||||  ||||| |||||| ||||||||||||||| ||||||    
T  23010487 agtttgagtgttgtagaattctatatatgatttgtgaccttctttccggcttggaaactactatttatactaaaaa 23010412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 11306766 - 11306684
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagat 129  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||  |||||| ||||||||||||||| |||| | ||||||    
T  11306766 agtttgagtgttgtagaattctttatatgatttgcgacccacttttcggcttggaaactactatttatactaaataactagat 11306684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 20229027 - 20229112
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||| ||||||  |||||| ||||||||||||| |||||||||||||||| |  ||||||||||| || |||||| |||||||||    
T  20229027 agtttcagtgttttagaattgtgtatatgatttgcgacccactttctggctagggaactactatttctactaaaaaactagatggc 20229112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 22123011 - 22123096
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||| ||||||  |||||| ||||||||||||| |||||||||||||||| |  ||||||||||| || |||||| |||||||||    
T  22123011 agtttcagtgttttagaattgtgtatatgatttgcgacccactttctggctagggaactactatttctactaaaaaactagatggc 22123096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 25946237 - 25946305
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  25946237 aatgagaaagc-ctttgattcctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 25946305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 11306471 - 11306398
Alignment:
Q  322 aaatgagaaagctcttcgattcctgc-aagttaaagttcaaataaatgttgaccatattaaatgagcctgttaa 394  Q
    |||||||||||||||||||||||||| |||  |||| ||||| |||||| |||||||||||||||  |||||||    
T  11306471 aaatgagaaagctcttcgattcctgcaaagcaaaaggtcaaacaaatgtcgaccatattaaatgattctgttaa 11306398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 18560223 - 18560153
Alignment:
Q  315 caaatgaaaatgagaaagctcttcgattcctgcaag-ttaaagttcaaataaatgttgaccatattaaatga 385  Q
    ||||| |||||||||||| ||||| ||||||||||  ||||| |||||| ||||||||||||||||||||||    
T  18560223 caaattaaaatgagaaag-tcttcaattcctgcaaaattaaaattcaaacaaatgttgaccatattaaatga 18560153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 23590775 - 23590691
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| ||||||||||||| || ||||| || |||||| |||||  ||||||||   ||||||||||||||    
T  23590775 agtttgagtgttgtagaattctgtatatgatttgcgatccactatccggcttggaaactcttatttata-ccaaaatctagatggc 23590691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 7390833 - 7390766
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcct 389  Q
    ||||||||||| |||  ||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||    
T  7390833 aaatgagaaag-tctctgattcctgcaaagttaaaggtcaaacaaacgttgaccatattaaatgagcct 7390766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 25915784 - 25915853
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaag-ttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||||||||  |||||| |||||  |||| |||||||||||||||||| ||||||||||    
T  25915784 aaatgagaaagc-cttcgatttgtgcaaggttaaaagtcaactaaatgttgaccatattagatgagcctgt 25915853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 31137041 - 31136972
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||||||||| |||| |||| ||||| || |||| ||||| ||||||||| |||||||||||||||||||    
T  31137041 aatgagaaagc-cttcaattcttgcaaagtaaaaggtcaaacaaatgttgatcatattaaatgagcctgtt 31136972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 394
Target Start/End: Complemental strand, 21290873 - 21290645
Alignment:
Q  166 ccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttggttgactttgacgtgaattttctttttgagccttactttg 265  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||  |  || || ||| |||||| ||| |    
T  21290873 ccacgtttccactacatggaaaccgtttcaatgcttgaaatcgtgctttcccgccttttgcttgactttgacgcaagattactctttcagccttgcttcg 21290774  T
Q  266 tcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgc-aagttaaagttcaaata 364  Q
    |||||| |||   | |   |  ||||||| |  || |||| |||||  |||| || |||||||||||| |||||||| |||| |||| |||| ||||| |    
T  21290773 tcgaaattctgaatatggaccttaggcttaacgtttcgtcgagattctccaattg-aaatgagaaagcccttcgatttctgcaaagtaaaaggtcaaaca 21290675  T
Q  365 aatgttgaccatattaaatgagcctgttaa 394  Q
    |||||  |||||||||||||||||||||||    
T  21290674 aatgtcaaccatattaaatgagcctgttaa 21290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 33128973 - 33128889
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatgg 131  Q
    ||||||||||||| |||||| ||||||||||||| ||| ||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  33128973 agtttgagtgttgtagaattatgtatatgatttgcgactcactttccggcttggaaactactatttatactaaaaacctagatgg 33128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 18780673 - 18780747
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaa 121  Q
    ||||||||||||| |||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||| |||||    
T  18780673 agtttgagtgttgtagaattctgtatatgatttgcgaccctctttccggcttggaaactactatttatactaaaa 18780747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 4601313 - 4601377
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||    
T  4601313 gaaagctcttcgattcctgcaaagttagaggtcaaacaaatgttgaccatattaaatgagcctgt 4601377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 20886955 - 20887021
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagc 387  Q
    |||||||||||||||| ||||||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  20886955 aaatgagaaagctcttagattcctgcaaagttaaaagtcaaacaaatgttgaccatattaaatgagc 20887021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 33128672 - 33128608
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||| |||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||    
T  33128672 gaaagttcttcgattcctgcaaagttaaaggtcaaacaaatgtcgaccatattaaatgagcctgt 33128608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 10158826 - 10158751
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||| |||||| ||||   |||||||| ||||||    
T  10158826 agtttgagtgttgtagaattttgtatatgatttgcgacccattttccggcttggaaacacttatttatactaaaaa 10158751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 21291010 - 21290936
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaa 121  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||  |||||| |||||  |||||||| |||||    
T  21291010 agtttgagtgttgtagaattctatatatgatttgtgacccacttttcggcttggaaactcttatttatactaaaa 21290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 25402118 - 25402188
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||||||||||| |||||||||| | || ||||||| ||||| |||||||| ||||||||||||||||||||    
T  25402118 aaatgagaaagc-cttcgattccggtaaagttaaaggtcaaacaaatgttgcccatattaaatgagcctgtt 25402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 22531306 - 22531239
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcct 389  Q
    |||||||||||| ||||| ||||||||| | ||||| ||||  ||||||||||||||||||||||||||    
T  22531306 aaatgagaaagc-cttcggttcctgcaaagataaaggtcaaccaaatgttgaccatattaaatgagcct 22531239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 25401828 - 25401902
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaa 121  Q
    ||||||||||||| |||||| | || ||||||||||||||| |||| |||||| ||||   |||||||| |||||    
T  25401828 agtttgagtgttgtagaattctataaatgatttgtgacccattttccggcttggaaacacttatttatactaaaa 25401902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 17132643 - 17132728
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| || |||||||||    
T  17132643 agtttgagtgttgtagaattttgtatatgatttgcgacccactttttggcttggaaactactatttatactaataaactagatggc 17132728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 15125238 - 15125323
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||  ||||| ||||||||||||||| |||||| |||||||||    
T  15125238 agtttgagtgttgtagaattctgtatatgatttgcgacccactttccagcttggaaactactatttatactaaaaaactagatggc 15125323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 17140251 - 17140336
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||||||| ||||| ||| || |||||||||    
T  17140251 agtttgagtgttgtagaattttgtatatgatttgcaacccactttctggcttggaaactactacttatactaataaactagatggc 17140336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 14961562 - 14961632
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||| ||||    
T  14961562 aaatgagaaagctcttcaattcctgcaaagttaaaggtcaaataaatattgaccatattaaatgagtctgt 14961632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 15391034 - 15391104
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||| ||||    
T  15391034 aaatgagaaagctcttcaattcctgcaaagttaaaggtcaaataaatattgaccatattaaatgagtctgt 15391104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 18098105 - 18098047
Alignment:
Q  335 cttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  18098105 cttcaattcctgcaaagttaaagttcaaacaaatgttgaccatattaaatgagcctgtt 18098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 7404509 - 7404425
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatgg 131  Q
    ||||| ||||||| |||||| ||||||||||||| ||||| ||||  |||| | ||||||||||||||| |||||| ||||||||    
T  7404509 agtttcagtgttgtagaattctgtatatgatttgcgaccctcttttcggctagtaaactactatttataataaaaacctagatgg 7404425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 12331352 - 12331421
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| ||| |||||||||||||||| ||||||||    
T  12331352 aatgagaaagc-cttcgattcctgcaaagttaaaggtcaaaaaaacgttgaccatattaaataagcctgtt 12331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 21668659 - 21668716
Alignment:
Q  183 ggaaaccgtttcaatgcttgaaatcatgctttcccgcctt--ttggttgactttgacg 238  Q
    |||||||||||| | |||||||||||||||||||||||||  ||| ||||||||||||    
T  21668659 ggaaaccgtttccaagcttgaaatcatgctttcccgccttcattgtttgactttgacg 21668716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 9560164 - 9560107
Alignment:
Q  335 cttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||| ||||||| ||||  |||||| |||||||||||||||||||||    
T  9560164 cttcgattcctgcaaagttaaagctcaatcaaatgtcgaccatattaaatgagcctgt 9560107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 15125434 - 15125501
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaagtt--aaagttcaaataaatgttgaccatattaaatgagc 387  Q
    |||||||||||||||| |||||||||||  |  |||| ||||| |||||| |||||||||||||||||    
T  15125434 aaatgagaaagctctttgattcctgcaaagtaaaaaggtcaaacaaatgtcgaccatattaaatgagc 15125501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 10309712 - 10309669
Alignment:
Q  348 aagttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  10309712 aagttaaaagtcaactaaatgttgaccatattaaatgagcctgt 10309669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 17132925 - 17132991
Alignment:
Q  322 aaatgagaaagctcttcgattcctgc-aagttaaagttcaaataaatgttgaccatattaaatgagc 387  Q
    |||||||||||||||||||||||||| |||| | || ||||| ||| || ||||||||| |||||||    
T  17132925 aaatgagaaagctcttcgattcctgcaaagtgataggtcaaacaaaagtcgaccatatttaatgagc 17132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 17140536 - 17140598
Alignment:
Q  325 tgagaaagctcttcgattcctgcaagttaaagttcaaataaatgttgaccatattaaatgagc 387  Q
    |||||||| |||||||||||||||||| | || ||||| ||| || |||||||||||| ||||    
T  17140536 tgagaaagttcttcgattcctgcaagtgataggtcaaacaaaagtcgaccatattaaacgagc 17140598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 17880810 - 17880741
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||| |||| |||||| ||||||  |||| ||||||||||||| |||||||||||||||    
T  17880810 aaatgagaaagc-ctttgatttctgcaaagttaaaagtcaactaaatgttgaccacattaaatgagcctgt 17880741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 11064568 - 11064625
Alignment:
Q  335 cttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||| ||||| | |||| ||||| |||||||||||||||||||||||| ||||    
T  11064568 cttcgattcatgcaaagataaaattcaactaaatgttgaccatattaaatgagtctgt 11064625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 7404220 - 7404156
Alignment:
Q  328 gaaagctcttcgattcctgc-aagttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||| ||||||||||||||| |||||| || ||||| |||||| ||||| ||||||||| |||||    
T  7404220 gaaatctcttcgattcctgcaaagttacaggtcaaacaaatgtcgaccaaattaaatgaacctgt 7404156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 394
Target Start/End: Original strand, 8827 - 9058
Alignment:
Q  162 tgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgctttcccgccttttggttgactttgacgtgaattttctttttgagccttac 261  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| |||||||| |||||||| ||||||| || | ||  || || ||| |||||| |    
T  8827 tgtcccacgtctccactacatgtaaatcgtttcaatgcttgaaatcgtgctttcctgccttttgattgacttagatgcgagattactctttcagccttgc 8926  T
Q  262 tttgtcgaaaatctagtttttcgctctaggcttgatattccgtcaagatttcccaaatgaaaatgagaaagctcttcgattcctgc-aagttaaagttca 360  Q
    || ||||||| |||  || | |||| ||||||| || || | || ||| ||| | |||  ||||| ||||||||||||||| || | |||| |||| |||    
T  8927 ttcgtcgaaattctgattatgcgct-taggcttaatgtttcatcgaga-ttctctaattgaaatgtgaaagctcttcgatttctacaaagtaaaaggtca 9024  T
Q  361 aataaatgttgaccatattaaatgagcctgttaa 394  Q
    || |||||  ||| ||||||||||||||||||||    
T  9025 aacaaatggcgactatattaaatgagcctgttaa 9058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 8694 - 8768
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaa 121  Q
    ||||| ||||||| ||| || ||||||||||||| ||||||||||| |||||| |||||  |||||||| |||||    
T  8694 agtttaagtgttgtagagttctgtatatgatttgcgacccactttccggcttggaaactcttatttatactaaaa 8768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 24477810 - 24477726
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatgg 131  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||| |||||| |||||||||||||||  ||||| ||||||||    
T  24477810 agtttgagtgttgtagaattctgtatatgatctgtgacccactttccggcttggaaactactatttatacaaaaaacctagatgg 24477726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 920877 - 920808
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||||||||| ||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||    
T  920877 aatgagaaagc-cttcgattcctgcaaagtaaaaggtcaaacaaatgttgaccatattaaatgagcctgtt 920808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 9007321 - 9007389
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||    
T  9007321 aatgagaaagct-ttcgattcctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagtctgt 9007389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 22264397 - 22264457
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagc 387  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  22264397 gaaatctcttcgattcctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagc 22264457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 15926933 - 15926868
Alignment:
Q  326 gagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||| |||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  15926933 gagaaacctcttc-attcctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 15926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 22738423 - 22738369
Alignment:
Q  76 atttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatg 130  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||| |||||||    
T  22738423 atttgtgacccactttccggcttggaaactactatttatactaaaaacctagatg 22738369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 23818553 - 23818621
Alignment:
Q  324 atgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||||||||| ||||||||||| ||| || |||| ||||| |||||||||||||||||||||||||||||    
T  23818553 atgagaaagc-cttcgattcctacaaagtaaaaggtcaaacaaatgttgaccatattaaatgagcctgtt 23818621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 24477509 - 24477452
Alignment:
Q  329 aaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatga 385  Q
    ||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||    
T  24477509 aaagctcttcgattcctgcaaagttaaaggtcaaacaaatattgaccatattaaatga 24477452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 921166 - 921091
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||||| |||||| ||||||||||||| |||||| |||| |||||| ||||   |||||||| ||||||    
T  921166 agtttgagtgttgtagaattatgtatatgatttgagacccattttcaggcttggaaacacttatttatactaaaaa 921091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 21284822 - 21284753
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||||||||||||||| | ||  | ||||| ||||||||||||||||||||||||||||    
T  21284822 aaatgagaaagc-cttcgattcctgcaaagatagtggtcaaacaaatgttgaccatattaaatgagcctgt 21284753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 22739092 - 22739056
Alignment:
Q  48 gtttgagtgttgaagaattttgtatatgatttgtgac 84  Q
    |||||||||||| ||||||||||||||||||||||||    
T  22739092 gtttgagtgttgtagaattttgtatatgatttgtgac 22739056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 24092944 - 24092874
Alignment:
Q  321 aaaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||| || ||||||||||||||| ||||||  |||| |||||||| |||| |||||||||||||||    
T  24092944 aaaatgagaacgc-cttcgattcctgcaaagttaaaagtcaactaaatgttaaccacattaaatgagcctgt 24092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 9007028 - 9007085
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaac 104  Q
    ||||||||||||| |||||| | || |||||||| |||||| ||||||||||| ||||    
T  9007028 agtttgagtgttgtagaattctataaatgatttgcgacccattttctggcttggaaac 9007085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 21302393 - 21302465
Alignment:
Q  315 caaatgaaaatgagaaagctcttcgattcctgcaag-ttaaagttcaaataaatgttgaccatattaaatgagc 387  Q
    ||||| |||||||||||||| ||||||||||||||  |||||  |||| ||||| ||||||| |||||||||||    
T  21302393 caaattaaaatgagaaagct-ttcgattcctgcaaaattaaaagtcaactaaatattgaccacattaaatgagc 21302465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 22602479 - 22602538
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaa 382  Q
    |||||||||| |||||||||||||||| || |||  ||||| |||||||||||||||||||    
T  22602479 aatgagaaag-tcttcgattcctgcaaagtaaaaagtcaaacaaatgttgaccatattaaa 22602538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 11323816 - 11323900
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatgg 131  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| | |||| |||||| |||||||| |||| | ||||||||    
T  11323816 agtttgagtgttgaagaattatgtatatgatttgcgacccactttccgacttggaaactattatttatactaaataactagatgg 11323900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 19279658 - 19279725
Alignment:
Q  325 tgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||    
T  19279658 tgagaaagctcttcgattcctgcaaagttaaaggtcaaaaaaatgttgaccatgttaaatgagcctgt 19279725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 11324105 - 11324172
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgttaa 394  Q
    |||||||||||||||||||||| |||| || ||||| |||||| |||||||||||||||||| |||||    
T  11324105 gaaagctcttcgattcctgcaaagttataggtcaaacaaatgtcgaccatattaaatgagccagttaa 11324172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 25568257 - 25568190
Alignment:
Q  326 gagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||||||||||| ||||||||||| ||||||| ||||| |||| |||||||||||||||||| |||||    
T  25568257 gagaaagctctttgattcctgcaaagttaaaggtcaaacaaatattgaccatattaaatgagtctgtt 25568190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 27189747 - 27189689
Alignment:
Q  334 tcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  27189747 tcttcgattcctacaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 27189689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 27597502 - 27597433
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||| |||||||||||||||| || |||| ||||| ||||||||||||||||||| ||||||||    
T  27597502 aaatgagaaag-tcttcgattcctgcaaagtaaaaggtcaaacaaatgttgaccatattaaacgagcctgt 27597433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 27839561 - 27839503
Alignment:
Q  334 tcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  27839561 tcttcgattcctacaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 27839503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 20478299 - 20478214
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| ||||||||||||| |||||| ||||  ||||| |||||  |||||||| |||| | |||||||||    
T  20478299 agtttgagtgttgtagaattatgtatatgatttgcgacccattttccagcttggaaactcttatttatactaaacacctagatggc 20478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 392
Target Start/End: Original strand, 23781070 - 23781129
Alignment:
Q  334 tcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||||||||||||||| ||||||  |||| ||||||||||||| ||||||||||||||||    
T  23781070 tcttcgattcctgcaaagttaaaagtcaactaaatgttgaccacattaaatgagcctgtt 23781129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 25577105 - 25577146
Alignment:
Q  350 gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||| ||||  ||||||||||||||||||||||||||||    
T  25577105 gttaaaggtcaaccaaatgttgaccatattaaatgagcctgt 25577146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 11972 - 11909
Alignment:
Q  329 aaagctcttcgattcctgcaag-ttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  11972 aaagctcttcgattcctgcaaggttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 11909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 12272 - 12187
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||| ||||||| |||||||||||||||||||| |||||| |||| |||||| | | || |||||||| ||||||||||||||||    
T  12272 agtttaagtgttgtagaattttgtatatgatttgcgacccaatttccggcttggatattaatatttatactaaaaatctagatggc 12187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 17987870 - 17987940
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||| ||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  17987870 aaatgaggaagctcttcgatttctgcaaagttaaaggtcaaacaaatgttgaccatattaaatgagcctgt 17987940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 16075669 - 16075740
Alignment:
Q  51 tgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||| |||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||| ||||||    
T  16075669 tgagtgttgtagaattatgtatatgatttgcgaccctctttccggcttgtaaactactatttatactaaaaa 16075740  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 24923757 - 24923687
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||||||||||| |||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||    
T  24923757 aaatgagaaagct-ttcgattcctgcaaagtaaaaggtcaaacaaatgttgaccatattaaatgagcctgtt 24923687  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 17987580 - 17987655
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||||  |||||| ||||||||||||| ||||||||||| |||||| ||||   |||||||| ||||||    
T  17987580 agtttgagtgttttagaattctgtatatgatttgcgacccactttccggcttggaaacacttatttatactaaaaa 17987655  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 23779121 - 23779036
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| | ||||||||||| |||| | || |  ||||| ||||||||||||||| |||||| ||| |||||    
T  23779121 agtttgagtgttgtagaattctatatatgatttgcgacctatttcccagcttggaaactactatttataataaaaacctaaatggc 23779036  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 23866074 - 23865989
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatggc 132  Q
    ||||||||||||| |||||| | ||||||||||| |||| | || |  ||||| ||||||||||||||| |||||| ||| |||||    
T  23866074 agtttgagtgttgtagaattctatatatgatttgcgacctatttcccagcttggaaactactatttataataaaaacctaaatggc 23865989  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 22969174 - 22969098
Alignment:
Q  315 caaatgaaaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||| ||| ||||||||||  ||||||||||||| |||||   |||| || |||||||||||||||||||||||||||    
T  22969174 caaataaaattgagaaagct--tcgattcctgcaaagttaatagtcaattagatgttgaccatattaaatgagcctgtt 22969098  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 22703323 - 22703255
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||| |||| ||||||||||| |||||||  |||| |||||||||||||||||||||| |||||    
T  22703323 aaatgagaaag-tctttgattcctgcaaagttaaagg-caaacaaatgttgaccatattaaatgaccctgt 22703255  T

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Target: scaffold0004 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 357560 - 357496
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  357560 gaaagctcttcgattcctgcaaagttaaaggtcaaacaaatgttgtccatattaaatgagcctgt 357496  T

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Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 378687 - 378744
Alignment:
Q  335 cttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||| ||||||  |||| ||||||||||||| |||||||||||||||    
T  378687 cttcgattcctgcaaagttaaaagtcaactaaatgttgaccacattaaatgagcctgt 378744  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 10070951 - 10071027
Alignment:
Q  315 caaatgaaaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||||    
T  10070951 caaattaaaatgagaaagc-cttcgattcctgcaaagttaaaagtcaacaaaatgttgaccatattaaatgagcctgt 10071027  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 14632464 - 14632400
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgag 386  Q
    |||||||||||| ||||||||||||||| ||||||| ||||  |||||||||||||||||||||||    
T  14632464 aaatgagaaagc-cttcgattcctgcaaagttaaaggtcaaccaaatgttgaccatattaaatgag 14632400  T

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Target: scaffold0056 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 54190 - 54126
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||||||||||||||||| || ||||||| |||||||||||| |||||||| ||||||||||||    
T  54190 gaaagctcttcgattcctgtaaagttaaaggtcaaataaatgtcgaccatatcaaatgagcctgt 54126  T

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Target: scaffold0056; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 54490 - 54406
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaatctagatgg 131  Q
    |||||||||| ||  ||||| ||||||||||||||||||  ||||| |||||| ||||||||||||||| || ||| ||||||||    
T  54490 agtttgagtgctgtcgaattctgtatatgatttgtgaccttctttccggcttggaaactactatttatactacaaacctagatgg 54406  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 61901 - 61965
Alignment:
Q  328 gaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||||||||||||||| ||||||| ||||| | |||| |||||||||||||||||||||    
T  61901 gaaagctcttcgattcctgcaatgttaaaggtcaaacatatgtcgaccatattaaatgagcctgt 61965  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 223039 - 223108
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    |||||||||| | ||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  223039 aaatgagaaatc-cttcgattcctgcaaagttaaaggtcaaccaaatgttgaccatattaaatgagcctgt 223108  T

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Target: scaffold0009; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 269668 - 269743
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||| ||| |||||| | |||||||||||| ||||||||||   |||| ||||||||||||||| ||||||    
T  269668 agtttgagtattgtagaattctatatatgatttgtaacccactttccatcttggaaactactatttatactaaaaa 269743  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 184828 - 184892
Alignment:
Q  322 aaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgag 386  Q
    |||||||||||| ||||||||||||||| ||||||| ||||  |||||||||||||||||||||||    
T  184828 aaatgagaaagc-cttcgattcctgcaaagttaaaggtcaaccaaatgttgaccatattaaatgag 184892  T

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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 29660 - 29736
Alignment:
Q  315 caaatgaaaatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgt 391  Q
    ||||| ||||||| ||||| ||||||||||||||| ||||||  |||| ||||||||||||| ||||||||| |||||    
T  29660 caaattaaaatgaaaaagc-cttcgattcctgcaaagttaaaagtcaactaaatgttgaccacattaaatgaccctgt 29736  T

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Target: scaffold0338 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 17334 - 17409
Alignment:
Q  47 agtttgagtgttgaagaattttgtatatgatttgtgacccactttctggcttgaaaactactatttatagtaaaaa 122  Q
    ||||||||||||| |||||| | ||||||| |||||||||| |||| |||||| ||||   |||||||| ||||||    
T  17334 agtttgagtgttgtagaattctatatatgagttgtgacccattttccggcttggaaacacttatttatactaaaaa 17409  T

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Target: scaffold0338; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 17623 - 17692
Alignment:
Q  323 aatgagaaagctcttcgattcctgcaa-gttaaagttcaaataaatgttgaccatattaaatgagcctgtt 392  Q
    ||||||||||| ||| ||||||||||| || |||| ||||| |||||||||||||||||||| ||| ||||    
T  17623 aatgagaaagc-ctttgattcctgcaaagtaaaaggtcaaacaaatgttgaccatattaaataagcttgtt 17692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 36849 - 36816
Alignment:
Q  359 caaataaatgttgaccatattaaatgagcctgtt 392  Q
    |||| |||||||||||||||||||||||||||||    
T  36849 caaacaaatgttgaccatattaaatgagcctgtt 36816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 76916 - 76864
Alignment:
Q  162 tgtcccacgtctccactacctggaaaccgtttcaatgcttgaaatcatgcttt 214  Q
    |||| |||||||||| ||| |||||||||||||| | ||||||||| ||||||    
T  76916 tgtcgcacgtctccattacttggaaaccgtttcatttcttgaaatcgtgcttt 76864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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