View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_high_1 (Length: 291)
Name: NF21304_high_1
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_high_1 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 41687723 - 41688011
Alignment:
| Q |
3 |
agagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagag |
102 |
Q |
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| T |
41687723 |
agagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagag |
41687822 |
T |
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| Q |
103 |
gggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcgg |
202 |
Q |
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| T |
41687823 |
aggaactatgtgaaagagggaaaagagcacaacaaaattatgaagcattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcgg |
41687922 |
T |
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| Q |
203 |
aaagccaagaaagaaagacattgaattggagttcgaagtttgtgagctgagatagttgaatgaaaaatgggccgatgatagcaatgatc |
291 |
Q |
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| T |
41687923 |
aaagccaagaaagaaagacattgaattggagttcgaagtttgtgagctgagaaagttgaatgaaaaatgggtcgatgatagcaatgatc |
41688011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 41686603 - 41686350
Alignment:
| Q |
9 |
aagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaac |
108 |
Q |
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| T |
41686603 |
aagaaactgcaagctgaaattctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagatttgagaaaaagagaggaac |
41686504 |
T |
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| Q |
109 |
tatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcggaaagcc |
208 |
Q |
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| T |
41686503 |
tttgtgaaagagggataagagcacaaaataattatgaaaaattgttgaaggaagttaaggaaaaaactagtttgggtgatagagacatcattggagagct |
41686404 |
T |
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| Q |
209 |
aagaaagaaagacattgaattggagttcgaagtttgtgagctgagatagttgaa |
262 |
Q |
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| T |
41686403 |
aagaaagaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaa |
41686350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 41718028 - 41717779
Alignment:
| Q |
34 |
atcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaactatgtgaaagagggaaaagagcaca |
133 |
Q |
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| T |
41718028 |
atcttcaagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41717929 |
T |
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| Q |
134 |
acaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcggaaagccaagaaagaaagacattgaattggag |
233 |
Q |
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| T |
41717928 |
aaataattatgaaaagttattgaaggaagtta---agaaaacaaacttagctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggag |
41717832 |
T |
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| Q |
234 |
ttcgaagtttgtgagctgagatagttgaatgaaaaatgggccgatgatagcaa |
286 |
Q |
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| T |
41717831 |
ttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatagcaa |
41717779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 41659590 - 41659332
Alignment:
| Q |
27 |
attctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaactatgtgaaagagggaaaa |
126 |
Q |
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||||||||| |||||||||||||||| |||| | ||| | |||||||||| ||| |||||| |||| ||||||| ||||||||| |||||||| |||| |
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| T |
41659590 |
attctacattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaa |
41659491 |
T |
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| Q |
127 |
gagcacaacaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcggaaagccaagaaagaaagacattga |
226 |
Q |
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| T |
41659490 |
gggcacagagtaattatgaaacattgttggaggaagttaag---aaaactagtttagttgaaggagacatcattagagagctaagaaagaagaataatga |
41659394 |
T |
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| Q |
227 |
attggagttcgaagtttgtgagctgagatagttgaatgaaaaatgggccgatgatagcaatg |
288 |
Q |
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| T |
41659393 |
attggagttggaagtttgtgagctgagaaagttgaagcgaaagtgggtggatgatagcaatg |
41659332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 41708956 - 41708707
Alignment:
| Q |
34 |
atcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaactatgtgaaagagggaaaagagcaca |
133 |
Q |
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|||||||||||||| |||||||||| ||| ||| |||||||||| ||||||||| |||| ||||||| |||||| ||||||| ||||||||||||||| |
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| T |
41708956 |
atcttcaagagaaggttgaaatggagaaaaaaacgaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41708857 |
T |
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| Q |
134 |
acaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagagagacaacatcggaaagccaagaaagaaagacattgaattggag |
233 |
Q |
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| T |
41708856 |
aaataattatgaaaagttattgaaggaagtta---agaaaacaaacttagctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggag |
41708760 |
T |
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| Q |
234 |
ttcgaagtttgtgagctgagatagttgaatgaaaaatgggccgatgatagcaa |
286 |
Q |
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| T |
41708759 |
ttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatagcaa |
41708707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 14682416 - 14682508
Alignment:
| Q |
71 |
gtttcaagttgaggaagatgtgaggaaaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagt |
163 |
Q |
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||||||| ||||||||| ||||||| || | |||| | ||||| |||||||||| |||||| | |||||||||| ||||||||||||||| |
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| T |
14682416 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagt |
14682508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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