View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_high_4 (Length: 248)
Name: NF21304_high_4
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_high_4 |
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| [»] scaffold0769 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 29312653 - 29312496
Alignment:
| Q |
7 |
agagatgaatttgagagaataaagaacacaatcaaagagagggttcatagagagatgctcaagcaagtgggagagagtcgggcaagtgagttcgtacaca |
106 |
Q |
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| T |
29312653 |
agagatgaatttgagagaataaagaacacaatcaaagagagggttcatagagagatgctcaagcaagtgggagagagtcgggcaagtgagttcgtacaca |
29312554 |
T |
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| Q |
107 |
cgagagtcaccgacagtctaatgaaatttgagttagacatgctcagataggatcagtg |
164 |
Q |
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| T |
29312553 |
cgagagtcaccgacagtctaatgaaatttgagttagacatgctcagataggatcagtg |
29312496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 34635297 - 34635426
Alignment:
| Q |
119 |
acagtctaatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaag |
218 |
Q |
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| T |
34635297 |
acagtctaataaaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatg |
34635396 |
T |
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| Q |
219 |
aacaattttcatttttgaagtgataaaacc |
248 |
Q |
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| T |
34635397 |
aacaatttccatttttgaagtgatgaaacc |
34635426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 29054467 - 29054588
Alignment:
| Q |
127 |
atgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaagaacaattt |
226 |
Q |
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| T |
29054467 |
atgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaactt |
29054566 |
T |
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| Q |
227 |
tcatttttgaagtgataaaacc |
248 |
Q |
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| T |
29054567 |
ccatttttgaagtgataaaacc |
29054588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 29312495 - 29312440
Alignment:
| Q |
193 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacc |
248 |
Q |
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| T |
29312495 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacc |
29312440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 4617 - 4488
Alignment:
| Q |
119 |
acagtctaatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaag |
218 |
Q |
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| T |
4617 |
acagtctaataaaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatg |
4518 |
T |
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| Q |
219 |
aacaattttcatttttgaagtgataaaacc |
248 |
Q |
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| T |
4517 |
aacaatttccatttttgaagtgatgaaacc |
4488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 28744054 - 28743925
Alignment:
| Q |
119 |
acagtctaatgaaatttgagttagacatgctcagataggatcagtgcgaccacttactctcaataacctgagtcaaatattcaccataaatcattacaag |
218 |
Q |
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|||||||||| |||||||||||||||| |||||||||||| | | |||||||| || |||||| |||| ||||||| ||||||||| || ||||||| |
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| T |
28744054 |
acagtctaatcaaatttgagttagacaaactcagataggattatcgtcaccacttaatcccaataatctgattcaaataatcaccataagtctttacaag |
28743955 |
T |
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| Q |
219 |
aacaattttcatttttgaagtgataaaacc |
248 |
Q |
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| T |
28743954 |
aacaatttccatttttgaagtgatgaaacc |
28743925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 13792255 - 13792317
Alignment:
| Q |
186 |
ctgagtcaaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacc |
248 |
Q |
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| T |
13792255 |
ctgagtcaaataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacc |
13792317 |
T |
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