View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_high_5 (Length: 238)
Name: NF21304_high_5
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_high_5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 41688192 - 41688013
Alignment:
| Q |
60 |
tttgtttgcaaagaagcgttatcctcaatgtccttgccaatctcaacattctgtttatctttgtcttgaaaatcagttatctcagcaagagcctcaccat |
159 |
Q |
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| T |
41688192 |
tttgtttgcaaaggagcgttatcctcaatgtccttgccaatctcaacattctgtttatctttgtcttgaaaatcagttatctcagcaagagcctcaccat |
41688093 |
T |
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| Q |
160 |
tcttcttctctgatttctctaattcactatttttcaccccacatgcatt-ttttcattctccaaaagacctccaactcca |
238 |
Q |
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| T |
41688092 |
tcttcttctctgatttctctaattcactatttttcacctcacatgcatttttttcattctccaaaagacctccaactcca |
41688013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 14682687 - 14682610
Alignment:
| Q |
148 |
gagcctcaccattcttcttctctgatttctctaattcactatttttcaccccacatgcattttt-tcattctccaaaa |
224 |
Q |
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| T |
14682687 |
gagcctcacaattcttcttcattgatttctccaactcactatttttcaccccaaatgcatttttctcattttccaaaa |
14682610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41708503 - 41708557
Alignment:
| Q |
18 |
gatgcaccttgagcatcattgctctttttgtggggtggttcatttgtttgcaaag |
72 |
Q |
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| T |
41708503 |
gatgcaccttgagcattcttgctccttttgttgggtggttcatttgtttgcaaag |
41708557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41717575 - 41717629
Alignment:
| Q |
18 |
gatgcaccttgagcatcattgctctttttgtggggtggttcatttgtttgcaaag |
72 |
Q |
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| T |
41717575 |
gatgcaccttgagcattcttgctccttttgttgggtggttcatttgtttgcaaag |
41717629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 14691086 - 14691036
Alignment:
| Q |
170 |
tgatttctctaattcactatttttcaccccacatgcattttt-tcattctc |
219 |
Q |
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| T |
14691086 |
tgatttctccaattcactatttttcacctcagatgcatttttctcattctc |
14691036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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