View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_high_6 (Length: 238)
Name: NF21304_high_6
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_high_6 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 29312179 - 29312400
Alignment:
| Q |
17 |
aatattgagagtgatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312179 |
aatattgagagtgatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatg |
29312278 |
T |
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| Q |
117 |
accatagtgagaagcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312279 |
accatagtgagaagcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcac |
29312378 |
T |
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| Q |
217 |
aatgccattaagtatatgtcta |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
29312379 |
aatgccattaagtatatgtcta |
29312400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 34635670 - 34635470
Alignment:
| Q |
33 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
132 |
Q |
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||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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| T |
34635670 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
34635573 |
T |
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| Q |
133 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
231 |
Q |
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| T |
34635572 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
34635473 |
T |
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| Q |
232 |
atg |
234 |
Q |
| |
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||| |
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| T |
34635472 |
atg |
34635470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 29054828 - 29054628
Alignment:
| Q |
36 |
taaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgc |
135 |
Q |
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|||||||||| ||||||||| ||||| ||||| |||||||| ||||||| || |||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
29054828 |
taaaagtggccggatataaggctgacactgattatgttcttggtgatattaat--agaggaaaaaactgagaatctttgtaaccatagtgagaagcttgc |
29054731 |
T |
|
| Q |
136 |
ggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtatatgt |
235 |
Q |
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|||||||| |||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29054730 |
tgttgcatttgggatacttaatttgaatggacagtcgacaatgcggtttttaaaaatttgagaatatgtggtgattgtcacaatgccatttagtatatgt |
29054631 |
T |
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| Q |
236 |
cta |
238 |
Q |
| |
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||| |
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| T |
29054630 |
cta |
29054628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 13792563 - 13792359
Alignment:
| Q |
33 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
132 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
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| T |
13792563 |
aaataaaagcggctggatataagcctgacactgattatgttctgcatgatattgatcaagaggaaaaagctgagagtctttgtaaccatagtgagaagct |
13792464 |
T |
|
| Q |
133 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgata-tggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
231 |
Q |
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||| |||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13792463 |
tgctgttgcatttgggatacttaatttgaatggacagtcgacgatacgggtttttaagaatttgagaatatgtggtgattgtcataatgccattaagtat |
13792364 |
T |
|
| Q |
232 |
atgtc |
236 |
Q |
| |
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||||| |
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| T |
13792363 |
atgtc |
13792359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 28743679 - 28743885
Alignment:
| Q |
33 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
132 |
Q |
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|||| ||| |||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
28743679 |
aaatgaaaatggctggatataagcctgacactgattatgttctgcaagatattgatcaagaggaaaaagctgagagtctctgtaaccatagtgagaagct |
28743778 |
T |
|
| Q |
133 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgata-tggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
231 |
Q |
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||| ||||| || |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28743779 |
tgctgttgcctttgggatacttaatttgaatggacagtcgacaatacgggtttttaagaatttgagaatatgcggtgattgtcacaatgccattaagtat |
28743878 |
T |
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| Q |
232 |
atgtcta |
238 |
Q |
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||||||| |
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| T |
28743879 |
atgtcta |
28743885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 4244 - 4444
Alignment:
| Q |
33 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
132 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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| T |
4244 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
4341 |
T |
|
| Q |
133 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
231 |
Q |
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||| |||||||| |||||||||||||||||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4342 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
4441 |
T |
|
| Q |
232 |
atg |
234 |
Q |
| |
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||| |
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|
| T |
4442 |
atg |
4444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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