View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21304_low_10 (Length: 221)
Name: NF21304_low_10
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_low_10 |
 | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (4 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 7457786 - 7457596
Alignment:
| Q |
15 |
tctccaaggctggatgaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7457786 |
tctccaaggctggatgaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggac |
7457687 |
T |
|
| Q |
115 |
ccatcaattcccttccaaaaactagaagctcagtaccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaatttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457686 |
ccatcaattcccttccaaaaactagaagctcagtaccgacagccaacgactccttatcacacaacataaaaactttatcacaaggaatttt |
7457596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 7411692 - 7411563
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
7411692 |
gaaccaaacaagcatcttggagtattcatcatttttccaactgaccacatatttgtcagaaagttatacttatgaatgataggagccattaattcctttc |
7411593 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagcca |
159 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |
|
|
| T |
7411592 |
caaagactagaagctcagtaccaacagcca |
7411563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 2620 - 2491
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
2620 |
gaaccaaacaagcatcttggagtattcatcatttttccaactgaccacatatttgtcagaaagttatacttatgaatgataggagccattaattcctttc |
2521 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagcca |
159 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |
|
|
| T |
2520 |
caaagactagaagctcagtaccaacagcca |
2491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 1422 - 1280
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
1422 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttc |
1323 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagccagcgactccttatc |
172 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
1322 |
caaagactagaagctcagtaccaacagccaacgattccctatc |
1280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 3956 - 4098
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
3956 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttc |
4055 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagccagcgactccttatc |
172 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
4056 |
caaagactagaagctcagtaccaacagccaacgattccctatc |
4098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 10151 - 10293
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
10151 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttc |
10250 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagccagcgactccttatc |
172 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
10251 |
caaagactagaagctcagtaccaacagccaacgattccctatc |
10293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 35023 - 34881
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
35023 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttc |
34924 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagccagcgactccttatc |
172 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
34923 |
caaagactagaagctcagtaccaacagccaacgattccctatc |
34881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 4069 - 4196
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
4069 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttc |
4168 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagc |
157 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |
|
|
| T |
4169 |
caaagactagaagctcagtaccaacagc |
4196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 48623 - 48481
Alignment:
| Q |
30 |
gaaccgaacgagcatcttggagtattcaacatttttccaattgaccacgtatttgatagatggtcatacttatgaatggtaggacccatcaattcccttc |
129 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||| ||||||| ||||||| |||||| ||| || ||||||||||||| ||||| |||| | |||| ||| |
|
|
| T |
48623 |
gaaccaaacaagcatctcggagtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattagttcctttc |
48524 |
T |
|
| Q |
130 |
caaaaactagaagctcagtaccgacagccagcgactccttatc |
172 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
48523 |
caaagactagaagctcagtaccaacagccaacgattccctatc |
48481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University