View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_low_2 (Length: 565)
Name: NF21304_low_2
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 43603168 - 43603510
Alignment:
| Q |
12 |
catcatcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgaca--gaat |
109 |
Q |
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| T |
43603168 |
catcttcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgacaaagaat |
43603267 |
T |
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| Q |
110 |
cttaggactaattttttctgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgt |
209 |
Q |
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| T |
43603268 |
cttaggactaattttttctgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgt |
43603367 |
T |
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| Q |
210 |
tggctgctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatcaactaa |
309 |
Q |
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| T |
43603368 |
tggctgctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatcaactaa |
43603467 |
T |
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| Q |
310 |
gctatagtgtaagtgtaactaacttttacatctaataattgat |
352 |
Q |
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| T |
43603468 |
gctatagtgtaagtgtaactaacttttacatctaataattgat |
43603510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 400 - 547
Target Start/End: Original strand, 43603507 - 43603654
Alignment:
| Q |
400 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
499 |
Q |
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| T |
43603507 |
tgattatcatttctctgtgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgc |
43603606 |
T |
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| Q |
500 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatct |
547 |
Q |
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| T |
43603607 |
gattctggcattttacaagggacctcaaatacggattgcgcggcatct |
43603654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 43616244 - 43616414
Alignment:
| Q |
132 |
atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg |
231 |
Q |
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| T |
43616244 |
atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg |
43616343 |
T |
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| Q |
232 |
ccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatc |
303 |
Q |
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| T |
43616344 |
tcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaa-ccacattaattttcatc |
43616414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 43609577 - 43609852
Alignment:
| Q |
12 |
catcatcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaa----tgctattttgaca-- |
105 |
Q |
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| T |
43609577 |
catcttcaagatttttatgctttcattattggggtagtacattat---tattccttaatctct--gttatttttcaaccaaattttattattttgatata |
43609671 |
T |
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| Q |
106 |
gaatcttaggactaattttttctgtaatccttcttggttgctttt-cagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgc |
204 |
Q |
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| T |
43609672 |
gaatcttaggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgc |
43609771 |
T |
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| Q |
205 |
ttcgttggctgctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaa |
285 |
Q |
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| T |
43609772 |
tatgctgtctggtgcaattgttaattgtcttccggcttcgacattcttctttgctgttctgctcaggtaaatttttgaaaa |
43609852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 424 - 547
Target Start/End: Original strand, 43616565 - 43616688
Alignment:
| Q |
424 |
tggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttacaagggacc |
523 |
Q |
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| T |
43616565 |
tggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggacc |
43616664 |
T |
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| Q |
524 |
tcaaatacggattgcgcggcatct |
547 |
Q |
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| T |
43616665 |
ccaattacggatcgcgcgtcatct |
43616688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 417 - 523
Target Start/End: Original strand, 43609933 - 43610039
Alignment:
| Q |
417 |
tgtagattggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttaca |
516 |
Q |
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| T |
43609933 |
tgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatggccggtgtagcgattctggccttttaca |
43610032 |
T |
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| Q |
517 |
agggacc |
523 |
Q |
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| T |
43610033 |
agggacc |
43610039 |
T |
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