View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_low_4 (Length: 268)
Name: NF21304_low_4
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 29282319 - 29282555
Alignment:
| Q |
13 |
aatatagaaaggttttgaactgtggccgcggttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcga |
112 |
Q |
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| T |
29282319 |
aatatagaaaggttttgaactgtggccgcagttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcga |
29282418 |
T |
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| Q |
113 |
tgttattacagacacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctctggacaaaatagtgtg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
29282419 |
tgttattacagacacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctcttgacaaaata--gta |
29282516 |
T |
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| Q |
213 |
ctaatattcaatcaatgccatatttatttgcattaatta |
251 |
Q |
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| T |
29282517 |
ctagtattcaatcaatgccatatttatttgcattaatta |
29282555 |
T |
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