View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_low_5 (Length: 260)
Name: NF21304_low_5
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48533051 - 48533295
Alignment:
| Q |
1 |
agagaagagaaagggctagtaaact----gagatggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatataaatttgcttatccaagatat |
96 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48533051 |
agagaagagaaagggctagtaaactaagtgagatggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatataaatttgcttatccaagatat |
48533150 |
T |
|
| Q |
97 |
catggaaaaatgatcaagcagcagagttgacacatgaagggatacaatctataacatctgtccttttgatgtcattatctgttttctttttattattatt |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48533151 |
catggaacaatgatcaagcagcagagttgacacatgaagggatacaatctataacatctgtccttttgatgtcattatctgttttctttttattattatt |
48533250 |
T |
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| Q |
197 |
gcatattccacgctgcaatcatgaagttatgtaataagttacatg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48533251 |
gcatattccacgctgcaatcatgaagttatgtaataagttacatg |
48533295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41511712 - 41511815
Alignment:
| Q |
1 |
agagaagagaaagggctagtaaact----gagatggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatataaatttgcttatccaagatat |
96 |
Q |
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|||||||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||| |
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| T |
41511712 |
agagaagagaaagggctaatgaacttagtgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattcaagatat |
41511811 |
T |
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| Q |
97 |
catg |
100 |
Q |
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|||| |
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| T |
41511812 |
catg |
41511815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41520752 - 41520855
Alignment:
| Q |
1 |
agagaagagaaagggctagtaaact----gagatggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatataaatttgcttatccaagatat |
96 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||| |
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| T |
41520752 |
agagaagagaaagggctaatgaacttagtgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattcaagatat |
41520851 |
T |
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| Q |
97 |
catg |
100 |
Q |
| |
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|||| |
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|
| T |
41520852 |
catg |
41520855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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