View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21304_low_6 (Length: 250)
Name: NF21304_low_6
Description: NF21304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21304_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 30552875 - 30552646
Alignment:
| Q |
18 |
aatatttacattcattaagtcttaagagtataggtgtaaatttcactttgttttgtttgtatgtccattaacttaattgataacaaatcgactaatctgc |
117 |
Q |
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| T |
30552875 |
aatatttacattcattaagtcttaagagtataggtgtaaatttcactttattttgtttgtatgtccattaacttaattgataacaaatcgactaatctgc |
30552776 |
T |
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| Q |
118 |
aaaaccatacttctattaatgttcggttagcttttaaatatgtctaactctaagaaaccatcaaagttcaactcgcataaactttttgtaactaaaagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30552775 |
aaaaccatacttctattaatgttcggttagcttttaaatctgtctaactctaagaaaccatcaaagttcaacttgcataaactttttgtaactaaaagaa |
30552676 |
T |
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| Q |
218 |
tgata-aaaatgtgtgctgcaatctatgaa |
246 |
Q |
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||||| ||||||||||||||| |||||||| |
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| T |
30552675 |
tgataaaaaatgtgtgctgcactctatgaa |
30552646 |
T |
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