View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21305_high_3 (Length: 305)
Name: NF21305_high_3
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21305_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 46937436 - 46937154
Alignment:
| Q |
6 |
tagataattctggatacacaatacaggtcctcttggatgcttagctcagaatgtagccaaatttggaactgatccatcaaagcttgatgaactaggatgt |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46937436 |
tagatatttctggatacacaatacaggtcctcttggatgcttagctcagaatgttgccaaatttggaactgatccatcaaagcttgatgaactaggatgt |
46937337 |
T |
|
| Q |
106 |
gttagtgggcataaccaagctgctaaaacctttaacctacaacttcatgctctgtgtagtaaattgcagggtcaatatccagattcaaatgtcacatatg |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46937336 |
gttagtgggcataaccaagctgttaaaacctttaacctacaacttcatgctctgtgtagtaaattgcagggtcaatatccagattcaaatgtcacatatg |
46937237 |
T |
|
| Q |
206 |
ttgatatcttcaccataaaatcaaacctcattgcaaactattcaagatacggttagtaacttggcttattacatttatctatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46937236 |
ttgatatcttcaccataaaatcaaacctcattgcaaactattcaagatacggttagtaacttggcttattgcatttatctatt |
46937154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 36639417 - 36639596
Alignment:
| Q |
66 |
atttggaactgatccatcaaagcttgatgaactaggatgtgttagtgggcataaccaagctgctaaaacctttaacctacaacttcatgctctgtgtagt |
165 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||| || || |||||| |||||||||| | ||||| | | | ||||| | | | || ||| |
|
|
| T |
36639417 |
atttggcactgatccatcgaaacttgatgaactaggatgtcttcgttaacataacttagctgctaaagcttttaatcaatatcttcaagatttctgcagt |
36639516 |
T |
|
| Q |
166 |
aaattgcagggtcaatatccagattcaaatgtcacatatgttgatatcttcaccataaaatcaaacctcattgcaaacta |
245 |
Q |
| |
|
||||||||||| || ||||||||| |||||| ||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
36639517 |
aaattgcagggccagtatccagatgtaaatgttacatatgttgatatctttaccataaaattagacctcattgcaaacta |
36639596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 36634611 - 36634833
Alignment:
| Q |
28 |
acaggtcctcttggatgcttagctcagaatgtagccaaatttggaactgatccatcaaagcttgatgaactaggatgtgttagtgggcataaccaagctg |
127 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||||| |||| |||||| |||| ||||||| ||||||||||||||||| || ||| || |||||||||| |
|
|
| T |
36634611 |
acaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaagattgatgaactaggatgtcttggtgcacacaaccaagctg |
36634710 |
T |
|
| Q |
128 |
ctaaaacctttaacctacaacttcatgctctgtgtagtaaattgcagggtcaatatccagattcaaatgtcacatatgttgatatcttcaccataaaatc |
227 |
Q |
| |
|
|||| ||||||| ||||| | || ||| |||| ||||||||||| || |||| |||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
36634711 |
ctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatctagatctaaatgttacatatgttgatatctttaccataaaatt |
36634810 |
T |
|
| Q |
228 |
aaacctcattgcaaactattcaa |
250 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
36634811 |
ggacctcattgcaaactactcaa |
36634833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University