View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21305_high_6 (Length: 262)

Name: NF21305_high_6
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21305_high_6
NF21305_high_6
[»] chr3 (3 HSPs)
chr3 (16-216)||(52957000-52957202)
chr3 (123-181)||(31680499-31680560)
chr3 (123-181)||(31918138-31918199)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 52957000 - 52957202
Alignment:
Q  16 catatttatttttaataaatttgtattgtatccatatgttaagtcaat--aaatgaatgagaataattattttttgtnnnnnnnntcaccactgagtcta 113  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||||||||||||||||||||        |||||||||||||||    
T  52957000 catatttatttttaataaatttgtatcgtctccatatgttaagtcaatttaaatgaatgagaataattattttttgtaaaaaaaatcaccactgagtcta 52957099  T
Q  114 ttttggacaagtagtcctaaggacaattgaaacaatttaatttgtgacatactttaaccaacaataaaatatatttttttatccttccaaaaaataaagc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52957100 ttttggacaagtagtcctaaggacaattgaaacaatttaatttgtgacatactttaaccaacaataaaataattttttttatccttccaaaaaataaagc 52957199  T
Q  214 gac 216  Q
    |||    
T  52957200 gac 52957202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 31680499 - 31680560
Alignment:
Q  123 agtagtcctaaggacaattgaaacaatttaatttgtgac---atactttaaccaacaataaa 181  Q
    |||||||||||||||||| ||||||||||||||| ||||    ||||||||| |||||||||    
T  31680499 agtagtcctaaggacaatcgaaacaatttaatttatgactatgtactttaactaacaataaa 31680560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 31918199 - 31918138
Alignment:
Q  123 agtagtcctaaggacaattgaaacaatttaatttgtgac---atactttaaccaacaataaa 181  Q
    |||||||||||||||||| ||||||||||||||| ||||    ||||||||| |||||||||    
T  31918199 agtagtcctaaggacaatcgaaacaatttaatttatgactatgtactttaactaacaataaa 31918138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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