View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21305_high_7 (Length: 246)
Name: NF21305_high_7
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21305_high_7 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4389850 - 4390076
Alignment:
| Q |
1 |
tgtaattatctcttcatacacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctc |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4389850 |
tgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtc--acaaggtgtccaatacaacctagtcctc |
4389947 |
T |
|
| Q |
101 |
ttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatcca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4389948 |
ttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttcttcaccaacctcttcaacaacatcatcca |
4390047 |
T |
|
| Q |
201 |
tcatcttaaacaatttctcaggcgattcc |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
4390048 |
tcatcttaaacaatttctcagacgattcc |
4390076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4377165 - 4377393
Alignment:
| Q |
1 |
tgtaattatctcttcatacacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377165 |
tgtaattatctcttcataaacaggtatctttttctcataatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctc |
4377264 |
T |
|
| Q |
101 |
ttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatcca |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
4377265 |
ttctccatcaacatctcaccagcagctttgaaataagtcgtattatccgttacaacttgaacaacattttcttccccaacctcttcaacaacatcatcca |
4377364 |
T |
|
| Q |
201 |
tcatcttaaacaatttctcaggcgattcc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
4377365 |
tcatcttaaacaatttctcaggcgattcc |
4377393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4384738 - 4384966
Alignment:
| Q |
1 |
tgtaattatctcttcatacacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctc |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384738 |
tgtaattatctcttcatgaacaggtatcttcttctcataatcttccaacatcctctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctc |
4384837 |
T |
|
| Q |
101 |
ttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
4384838 |
ttctccatcaacatctcaccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaacatcatcca |
4384937 |
T |
|
| Q |
201 |
tcatcttaaacaatttctcaggcgattcc |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
4384938 |
tcatcttaaacaatttctcagacgattcc |
4384966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 4414677 - 4414498
Alignment:
| Q |
30 |
tcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctct |
129 |
Q |
| |
|
||||||| || |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| || | |
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|
| T |
4414677 |
tcttctcatagtcttccaatatcatctcaattgtgtgtgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaacttt |
4414578 |
T |
|
| Q |
130 |
gaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
210 |
Q |
| |
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| | || | ||||| || ||||||| ||| | |||||||||||| ||||||||||| |||| ||||||||||||||||| |
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|
| T |
4414577 |
gtagtaggttgtattgtctgtcacaatttggacaacattttcttc-ccaacctcttctacaatttcatccatcatcttaaa |
4414498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 4370053 - 4370199
Alignment:
| Q |
45 |
ccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtatt |
144 |
Q |
| |
|
|||| ||||||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||||||| |||||||| | | | ||||| |
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| T |
4370053 |
ccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtatt |
4370152 |
T |
|
| Q |
145 |
atccgtcacaacttgaagaacattttcttcaccaacctcttcaacaa |
191 |
Q |
| |
|
|||||||||| ||| | |||||||||||| |||||||||||||||| |
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|
| T |
4370153 |
gtccgtcacaatttggacaacattttcttctccaacctcttcaacaa |
4370199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 4360269 - 4360441
Alignment:
| Q |
57 |
caatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaac |
156 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||| ||||||||||| || | |||||| | || | |||| ||||| ||||| |
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| T |
4360269 |
caatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaac |
4360368 |
T |
|
| Q |
157 |
ttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattcc |
229 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||| ||||||| |
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|
| T |
4360369 |
gtggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattcc |
4360441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 5725643 - 5725483
Alignment:
| Q |
50 |
atcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccg |
149 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | | || | | | | |||| |
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|
| T |
5725643 |
atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagtatgttgcactgtccg |
5725544 |
T |
|
| Q |
150 |
tcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
210 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
5725543 |
tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
5725483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 4365773 - 4365837
Alignment:
| Q |
165 |
cattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattcc |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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|
| T |
4365773 |
cattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattcc |
4365837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 15658882 - 15658701
Alignment:
| Q |
29 |
ttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctc |
128 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| || || | ||||| |||||||||||||| | ||||||||||||||||| ||||||||| || |
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| T |
15658882 |
ttcttctcaaaatcctccaacatcaagtcaatacaatgagcagcacatggtgtccaatacaaatgtggcctcttctccatcaacaactcaccagctgcct |
15658783 |
T |
|
| Q |
129 |
tgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
210 |
Q |
| |
|
| ||| || | ||| ||||| || || || | |||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
15658782 |
tataatttgctgcattgtccgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
15658701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 245814 - 245861
Alignment:
| Q |
163 |
aacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
210 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
245814 |
aacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
245861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 244685 - 244638
Alignment:
| Q |
163 |
aacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
210 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||| ||||||||||| |
|
|
| T |
244685 |
aacattttcttctccaatcttttcaacaacatcatcaatcatcttaaa |
244638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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