View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21305_low_1 (Length: 423)

Name: NF21305_low_1
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21305_low_1
NF21305_low_1
[»] chr5 (3 HSPs)
chr5 (16-86)||(12819462-12819532)
chr5 (2-76)||(12820939-12821015)
chr5 (112-162)||(12819689-12819736)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12819462 - 12819532
Alignment:
Q  16 aataaagtatttagtattttaagaaaattgttgaagaattgattaaattttcttctagactattctagaaa 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12819462 aataaaatatttagtattttaagaaaattgttgaagaattgattaaattttcttctagactcttctagaaa 12819532  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 12820939 - 12821015
Alignment:
Q  2 ataataaaagat--aaaataaagtatttagtattttaagaaaattgttgaagaattgattaaattttcttctagact 76  Q
    ||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12820939 ataataaaagattaaaaaaaaagtatttagtattttaagagaattgttgaagaattgattaaattttcttctagact 12821015  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 12819689 - 12819736
Alignment:
Q  112 tgtagccgctgaacgaaagtgtagtgatcaagaagatgtagaatcttctag 162  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  12819689 tgtagccgctgaacgaaagtgtagcgatc---aagatgtagaatcttctag 12819736  T

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