View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21305_low_2 (Length: 351)
Name: NF21305_low_2
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21305_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 4175957 - 4176133
Alignment:
| Q |
1 |
agggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgt |
100 |
Q |
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| T |
4175957 |
agggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgt |
4176056 |
T |
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| Q |
101 |
tcaagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
177 |
Q |
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| T |
4176057 |
tcaagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
4176133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 4176240 - 4176289
Alignment:
| Q |
288 |
ttcaattcatcgactatgatgagtcatttgagtaggaagggttgcatgtg |
337 |
Q |
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| T |
4176240 |
ttcaattcatcgactgtgatgagtcatttgagtaggaggggttgcatgtg |
4176289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 55518567 - 55518691
Alignment:
| Q |
53 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcatttta |
152 |
Q |
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| T |
55518567 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
55518666 |
T |
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| Q |
153 |
ttttagaagttcttgatattttctg |
177 |
Q |
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| T |
55518667 |
ttctcgagattctcgatattttctg |
55518691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 8902901 - 8902983
Alignment:
| Q |
29 |
tgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagct |
111 |
Q |
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| T |
8902901 |
tgttgtgtgtgcatggggaggaataaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagct |
8902983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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