View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21305_low_3 (Length: 307)
Name: NF21305_low_3
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21305_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 3731331 - 3731621
Alignment:
| Q |
1 |
aatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataaccat |
100 |
Q |
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| T |
3731331 |
aatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataaccat |
3731430 |
T |
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| Q |
101 |
tgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagt |
200 |
Q |
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| T |
3731431 |
tgtcatattatcaaataatctaacttaatcacacattaa--tagcattcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagt |
3731528 |
T |
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| Q |
201 |
acctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataat |
293 |
Q |
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| T |
3731529 |
acctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
158 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
257 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
258 |
ggctttgagaaattagacattccctagaagaataat |
293 |
Q |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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