View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21305_low_5 (Length: 297)
Name: NF21305_low_5
Description: NF21305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21305_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 6864558 - 6864847
Alignment:
| Q |
8 |
cgaagaatatacttaaagcattatgtgcgaaagttaatgttatacaatatgttatatgggatgaggtgcattagtggtagtatgatcgcacgtgaaaaga |
107 |
Q |
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| T |
6864558 |
cgaaaaatatacttaaagcattatgtgcgaaagttaatgttatacaatatgttatatgggatgaggtgcattagtggtagtatgatcgcacgtgaaaaga |
6864657 |
T |
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| Q |
108 |
aatgtgctttaattatacatatatgttgccttattatacatagtatcaaattacactacctggtcgtaagctctctgcaagaaggacgagtaaattgcgc |
207 |
Q |
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| T |
6864658 |
aatgtgctttaattatacatatatgttgccttattatacatagtatcaaattacactacctggtcgtaagctctctgcaagaaggacgagtaaattgcgc |
6864757 |
T |
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| Q |
208 |
aaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttcttctatccctcactcgacacatcacgtaggga |
297 |
Q |
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| T |
6864758 |
aaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatctcgtaggga |
6864847 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 49147306 - 49147195
Alignment:
| Q |
163 |
ctacctggtcgtaagctctctgcaagaaggacgagtaaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttg |
262 |
Q |
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|||||||||| || || || |||||||| || ||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || || || |
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| T |
49147306 |
ctacctggtcataggccctttgcaagaatgaggagtaaattgcacagaaaggcttaaggccttcacaagctagacctgcagcaaatgtaacggcatgctg |
49147207 |
T |
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| Q |
263 |
ttcttctatccc |
274 |
Q |
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| T |
49147206 |
ttctgctatccc |
49147195 |
T |
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