View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21306_high_1 (Length: 910)
Name: NF21306_high_1
Description: NF21306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21306_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 823; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 823; E-Value: 0
Query Start/End: Original strand, 18 - 892
Target Start/End: Original strand, 11902242 - 11903116
Alignment:
| Q |
18 |
tagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtgttgaagatcttatcgcatgttgatgctgtcatctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11902242 |
tagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggtgttgaagatcttatcgcatgttgatgttgtcatctt |
11902341 |
T |
|
| Q |
118 |
cacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacgattctgggatcccacatgac |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11902342 |
cacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacaagtctgggatcccacatgac |
11902441 |
T |
|
| Q |
218 |
agatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatcccccatcgaattcacagtcatgttttcttcagaggtgactagccttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11902442 |
agatccaaagcaaaatcaaatgaagctcgcaacattccacctttaactttatcccccatcgaattcacagtcatgttttcttcacaggtgactagccttg |
11902541 |
T |
|
| Q |
318 |
cgagtttatgcattaaccgattcattctatataagtgactacttacaacaccatcttctttttcttccacttgttggaaaaccaacggaacaaagtcatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902542 |
cgagtttatgcattaaccgattcattctatatgagtgattacttacaacaccttcttctttttcttccacttgttggaaaaccaacggaacaaagtcatt |
11902641 |
T |
|
| Q |
418 |
gaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttgga |
517 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902642 |
gaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttgga |
11902741 |
T |
|
| Q |
518 |
aacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgcta |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902742 |
aacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgcta |
11902841 |
T |
|
| Q |
618 |
tttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcac |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902842 |
tttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcac |
11902941 |
T |
|
| Q |
718 |
gagttcccattcgatgttgtcttgtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcatgtctgttaagccct |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902942 |
gagttcccattcgatgttgtcttgtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcatgtctgttaagccct |
11903041 |
T |
|
| Q |
818 |
ttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactg |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903042 |
ttcaaaacatacctggcaacagaaatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactg |
11903116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 11731960 - 11731630
Alignment:
| Q |
18 |
tagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtgttgaagatcttatcgcatgttgatgctgtcatctt |
117 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| || |||| | |||||||| |
|
|
| T |
11731960 |
tagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatctt |
11731861 |
T |
|
| Q |
118 |
cacctcgtgtggaagccgagggttgttagtg---ctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacgattctgggatcccacat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||| | |||||| ||||||||||||||| || |||| ||| ||||| |||||||| |
|
|
| T |
11731860 |
cacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctata---aacatcgaatctggaatcccacac |
11731764 |
T |
|
| Q |
215 |
gacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatcccccatcgaattcacagtcatgttttcttcagaggtgactagcc |
314 |
Q |
| |
|
|| ||||||||| |||||||||| |||||||||| |||||| || |||||| || ||| | |||| ||||| |||||||| || | |||| || |
|
|
| T |
11731763 |
gaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttctccctttgaatctacagtgatgttttcgccactagccactaacc |
11731664 |
T |
|
| Q |
315 |
ttgcgagtttatgcattaaccgattcattctata |
348 |
Q |
| |
|
||| |||||||||||| |||| ||||||||||| |
|
|
| T |
11731663 |
ttgtgagtttatgcatgaacctgttcattctata |
11731630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 26 - 348
Target Start/End: Complemental strand, 11860307 - 11859979
Alignment:
| Q |
26 |
ggaaccatcttaatccccaagtcatgtagatccagcacacgcaggga---cttgaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacct |
122 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||| ||| || || || ||||||||||| |||||||||||| || ||||||| ||||| ||| |||| |
|
|
| T |
11860307 |
ggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcacaagttgatgttgtcacctttacct |
11860208 |
T |
|
| Q |
123 |
cgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacgattctgggatcccacatgacagatc |
222 |
Q |
| |
|
||| |||||||||||||||||| || |||| |||||||||| ||| || |||||||||||||| | |||| | | || |||||| ||||||| ||||| |
|
|
| T |
11860207 |
cgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgaaagatc |
11860108 |
T |
|
| Q |
223 |
caaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatcccccatcgaattcacagtcatgttttctt---cagaggtgactagccttgcg |
319 |
Q |
| |
|
||||||||||| || ||| |||||| ||||||| || ||| | ||||||||| || ||| || |||||||| | ||| | | || |||||||| |
|
|
| T |
11860107 |
taaagcaaaatcgaacgaaactcgcagcattccatcttgaaccctttcccccatcacatccacggtgatgttttcgttaccagcgatttcttgccttgcg |
11860008 |
T |
|
| Q |
320 |
agtttatgcattaaccgattcattctata |
348 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |
|
|
| T |
11860007 |
agtttatgcatcaacggattcattctata |
11859979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 24 - 353
Target Start/End: Complemental strand, 11828174 - 11827839
Alignment:
| Q |
24 |
ttggaaccatcttaatccccaagtcatgtagatccagcacacgcaggga---cttgaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcac |
120 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||| || || || ||||||||||| |||||||||||| || ||||| | ||||||||| || |
|
|
| T |
11828174 |
ttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcacaagttgacgttgtcatctttac |
11828075 |
T |
|
| Q |
121 |
ctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacgattctgggatcccacatgacaga |
220 |
Q |
| |
|
|||||| ||||| |||||||||||| || |||| |||||||||||||| || |||||||||||| | | |||| ||| || |||||| ||||||| ||| |
|
|
| T |
11828074 |
ctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacaccgaatcagggatctcacatgaaaga |
11827975 |
T |
|
| Q |
221 |
tccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatcccccatcgaattcacagtcatgttttctt---cagaggtgactagccttg |
317 |
Q |
| |
|
|| |||||||||| || ||| |||||| | | || || |||| | ||||||||| || ||| || |||||||| | ||| | || | |||| |
|
|
| T |
11827974 |
tctaaagcaaaattgaacgaaactcgcagcgtcccgccacgaactctctcccccatcacatccacggtgatgttttcgtcaccagcaatttcttgtcttg |
11827875 |
T |
|
| Q |
318 |
cgagtttatgcattaaccgattcattctatataagt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11827874 |
cgagtttatgcattaaccgattcattctatataagt |
11827839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 379 - 546
Target Start/End: Complemental strand, 11859921 - 11859754
Alignment:
| Q |
379 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
478 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||| |||||| ||| | ||| ||||||||||| |||| || | ||||| |||||||| ||||||||| |
|
|
| T |
11859921 |
ttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagt |
11859822 |
T |
|
| Q |
479 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
546 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
11859821 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataactt |
11859754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 379 - 543
Target Start/End: Complemental strand, 11827786 - 11827622
Alignment:
| Q |
379 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
478 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||| | |||| ||| ||| ||||||||||| |||| || | ||||| |||||| ||||||||||| |
|
|
| T |
11827786 |
ttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagt |
11827687 |
T |
|
| Q |
479 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataa |
543 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
11827686 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa |
11827622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 33 - 353
Target Start/End: Complemental strand, 12039065 - 12038739
Alignment:
| Q |
33 |
tcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaag |
132 |
Q |
| |
|
|||| |||||||||||||| | ||| | ||| |||| | ||||||||||| ||||||||||| || ||||||| |||||||| ||||||| ||||| |
|
|
| T |
12039065 |
tcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaag |
12038966 |
T |
|
| Q |
133 |
ccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaa |
232 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||| |||||||| || ||||| || |||| | |||||||||||||| ||| ||| |||||| || |
|
|
| T |
12038965 |
ccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacacacaatctgggatcccacacaacaaatctaaagcataa |
12038866 |
T |
|
| Q |
233 |
tcaaatgaagctcgcaacattccacctgtaactttatcccccatcgaattcacagtcatgttttc------ttcagaggtgactagccttgcgagtttat |
326 |
Q |
| |
|
||||| ||| |||| | ||||||| | ||| ||||||||||||| ||| || |||||||| || ||||||||||||||| ||||||| |
|
|
| T |
12038865 |
tcaaacgaaactcgtagcattccatcgtgaacaccctcccccatcgaatccacggtgatgttttcacgactgtcgatggtgactagccttgcaagtttat |
12038766 |
T |
|
| Q |
327 |
gcattaaccgattcattctatataagt |
353 |
Q |
| |
|
|||||||| | || ||||||||||||| |
|
|
| T |
12038765 |
gcattaacgggtttattctatataagt |
12038739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 379 - 546
Target Start/End: Complemental strand, 12038695 - 12038513
Alignment:
| Q |
379 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtg---------------agaaatcct |
463 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| |||||| ||| ||||| ||||||||||| |||| || || ||||||||| |
|
|
| T |
12038695 |
ttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgaggaaattgttagaaatcct |
12038596 |
T |
|
| Q |
464 |
tcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
546 |
Q |
| |
|
||||| ||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
12038595 |
tcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
12038513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 452 - 621
Target Start/End: Complemental strand, 11731517 - 11731348
Alignment:
| Q |
452 |
gtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaa |
551 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||||||||||| ||||||||||||| || | |||||||||||||||| ||||||| || || || | | |
|
|
| T |
11731517 |
gtgataaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataac |
11731418 |
T |
|
| Q |
552 |
gcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
621 |
Q |
| |
|
| |||||||||| |||||| ||||||||||||| | |||||||| ||||||||| ||| ||||||| |
|
|
| T |
11731417 |
atgtgggaagatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg |
11731348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 764
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
| Q |
686 |
atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag |
764 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
11731301 |
atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag |
11731226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 546
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
| Q |
456 |
gaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
546 |
Q |
| |
|
|||||||||| || ||| |||| | |||||||||||| |||||||||||| |||| ||||||||||||||| || ||||||| ||||| |
|
|
| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt |
11975064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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